Error when using normalise_data

[sanhe374]

Hello,

When I run normalise data I get the following error.

Error in expr[, all_fullname_markers] : subscript out of bounds

What does that mean?

R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)

Matrix products: default

locale:
[1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252 LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C
[5] LC_TIME=Swedish_Sweden.1252

attached base packages:
[1] grid parallel stats4 stats graphics grDevices utils datasets methods base

other attached packages:
[1] cowplot_1.1.1 shinycssloaders_1.0.0 ComplexHeatmap_2.6.2 writexl_1.3.1 shinydashboard_0.7.1
[6] shinyjs_2.0.0 shiny_1.5.0 ConsensusClusterPlus_1.54.0 FlowSOM_1.22.0 igraph_1.2.6
[11] purrr_0.3.4 ruv_0.9.7.1 readxl_1.3.1 ggplot2_3.3.3 flowCore_2.2.0
[16] CytofRUV_0.1 CATALYST_1.14.0 SingleCellExperiment_1.12.0 SummarizedExperiment_1.20.0 Biobase_2.50.0
[21] GenomicRanges_1.42.0 GenomeInfoDb_1.26.2 IRanges_2.24.1 S4Vectors_0.28.1 BiocGenerics_0.36.0
[26] MatrixGenerics_1.2.0 matrixStats_0.57.0

loaded via a namespace (and not attached):
[1] circlize_0.4.12 drc_3.0-1 plyr_1.8.6 splines_4.0.3 BiocParallel_1.24.1
[6] scater_1.18.3 TH.data_1.0-10 digest_0.6.27 htmltools_0.5.1.1 viridis_0.5.1
[11] magrittr_2.0.1 CytoML_2.2.1 cluster_2.1.0 aws.signature_0.6.0 openxlsx_4.2.3
[16] RcppParallel_5.0.2 sandwich_3.0-0 flowWorkspace_4.2.0 cytolib_2.2.1 jpeg_0.1-8.1
[21] colorspace_2.0-0 ggrepel_0.9.1 haven_2.3.1 dplyr_1.0.3 crayon_1.3.4
[26] RCurl_1.98-1.2 jsonlite_1.7.2 hexbin_1.28.2 graph_1.68.0 survival_3.2-7
[31] zoo_1.8-8 glue_1.4.2 gtable_0.3.0 nnls_1.4 zlibbioc_1.36.0
[36] XVector_0.30.0 GetoptLong_1.0.5 DelayedArray_0.16.0 ggcyto_1.18.0 car_3.0-10
[41] BiocSingular_1.6.0 Rgraphviz_2.34.0 shape_1.4.5 abind_1.4-5 scales_1.1.1
[46] mvtnorm_1.1-1 Rcpp_1.0.5 plotrix_3.7-8 xtable_1.8-4 viridisLite_0.3.0
[51] clue_0.3-58 foreign_0.8-81 rsvd_1.0.3 tsne_0.1-3 httr_1.4.2
[56] RColorBrewer_1.1-2 ellipsis_0.3.1 farver_2.0.3 pkgconfig_2.0.3 XML_3.99-0.5
[61] scuttle_1.0.4 labeling_0.4.2 later_1.1.0.1 tidyselect_1.1.0 rlang_0.4.10
[66] reshape2_1.4.4 munsell_0.5.0 cellranger_1.1.0 tools_4.0.3 generics_0.1.0
[71] ggridges_0.5.3 fastmap_1.0.1 aws.s3_0.3.21 stringr_1.4.0 yaml_2.2.1
[76] zip_2.1.1 RBGL_1.66.0 sparseMatrixStats_1.2.0 mime_0.9 xml2_1.3.2
[81] compiler_4.0.3 rstudioapi_0.13 beeswarm_0.2.3 curl_4.3 png_0.1-7
[86] tibble_3.0.5 stringi_1.5.3 forcats_0.5.0 lattice_0.20-41 Matrix_1.2-18
[91] vctrs_0.3.6 pillar_1.4.7 lifecycle_0.2.0 GlobalOptions_0.1.2 BiocNeighbors_1.8.2
[96] data.table_1.13.6 bitops_1.0-6 irlba_2.3.3 httpuv_1.5.5 R6_2.5.0
[101] latticeExtra_0.6-29 promises_1.1.1 gridExtra_2.3 RProtoBufLib_2.2.0 rio_0.5.16
[106] vipor_0.4.5 codetools_0.2-18 MASS_7.3-53 gtools_3.8.2 rjson_0.2.20
[111] withr_2.4.0 multcomp_1.4-15 GenomeInfoDbData_1.2.4 hms_1.0.0 ncdfFlow_2.36.0
[116] beachmat_2.6.4 DelayedMatrixStats_1.12.2 carData_3.0-4 Cairo_1.5-12.2 Rtsne_0.15
[121] base64enc_0.1-3 ggbeeswarm_0.6.0