/anneal_predictor

Predict DNA annealing using a thermodynamics approach

Primary LanguageRust

anneal_predictor

This is an example of a novel(but naive) DNA search method that does not use the primary DNA sequence. Instead, it takes a small search sequence and genome and searches for energy wells. This approach can be significantly more accurate in predicting DNA annealing than primary sequence alone.

Dependencies

You will need Rust in order to build this project. You can acquire it with rustup like so:

  • On Linux and macOS: 
    $ curl https://sh.rustup.rs -sSf | sh

Building from source

$ git clone https://github.com/mttmartin/anneal_predictor
$ cd anneal_predictor
$ cargo build --release

After building, you will find an executable in the ./target/release directory.