Pinned Repositories
Barriers
Find local minima and energy barriers of an energy landscape
Bio-RNA-RNAaliSplit
Split and decompose structural RNA multiple sequence alignments
Bio-ViennaNGS
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
Bio-WET
Bio-WET is a Bioinformatics Web Services Evaluation Toolkit
CMviz
Visualization and workflow management for covariance-model based screen of viral genomes
RNAwl
An implementation of the Wang-Landau algorithm for sampling the Density of States of RNA secondary structures
viRNA
A collection of conserved viral RNA structures
Barriers
Compute local minima and energy barriers of a landscape
ViennaRNA
The ViennaRNA Package
mtw's Repositories
mtw/Bio-ViennaNGS
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
mtw/Bio-RNA-RNAaliSplit
Split and decompose structural RNA multiple sequence alignments
mtw/CMviz
Visualization and workflow management for covariance-model based screen of viral genomes
mtw/viRNA
A collection of conserved viral RNA structures
mtw/RNAwl
An implementation of the Wang-Landau algorithm for sampling the Density of States of RNA secondary structures
mtw/GENCODE43
GENCODE v43 annotation data
mtw/ITNFV-Data
Supporting data for Ochsenreiter et al. (2019)
mtw/Perl6-Bio-ViennaNGS
Perl6 port of Bio::ViennaNGS
mtw/plfoldz
Compute opening energy z scores of RNA
mtw/AlgoUE2019
mtw/awesome
😎 Awesome lists about all kinds of interesting topics
mtw/awesome-quarto
A curated list of Quarto talks, tools, examples & articles! Contributions welcome!
mtw/bioconda-recipes
Conda recipes for the bioconda channel.
mtw/bioperl-live
Core BioPerl 1.x code
mtw/bryanwweber.github.io
Personal website at https://bryanwweber.com
mtw/FileDirUtil
A Moose Role for transparent file IO
mtw/Flavivirus_NCBI
mtw/gbmunge
Munge GenBank files into FASTA and tab-separated metadata
mtw/GenomeMatrix
mtw/mtw.github.io
michaelwolfinger.com
mtw/mview
MView extracts and reformats the results of a sequence database search or multiple alignment.
mtw/perl6-style-guide
mtw/quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
mtw/RNAConservation
A pipeline and collection of tools to characterize RNA structure conservation, built around the ViennaRNA Package.
mtw/simrna_scripts
mtw/sissiz
SISSIz: Dinucleotide controlled random alignments and RNA gene prediction
mtw/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
mtw/treekin
[ARCHIVED] Please visit the official ViennaRNA Treekin repository
mtw/viraln
A collection of viral full-genome multiple sequence alignments
mtw/virmap