muellsen

Researcher in computational statistics, optimization, microbiome data analysis, and microbial ecology; group software at https://github.com/bio-datascience

Helmholtz Zentrum Munich/ Flatiron Institute Munich/New York

Pinned Repositories

c-lasso
c-lasso: a Python package for constrained sparse regression and classification
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command-line-tutorial
1 1 00
GPMicrobiome
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MNA
MATLAB scripts and functions for Microbial Network Analysis (MNA)
Language:C++2 3 12
OceanProvinces
Exploratory Data Analysis for Data-driven Ocean Province Estimation
Language:HTML5 2 01
PCM
Perspective M-estimation via proximal decomposition
Language:MATLAB5 3 00
pCMALib
Parallel FORTRAN code for CMA-ES
Language:Fortran5 4 21
pulsar
pulsar: Parallel Utilities for Lambda Selection along a Regularization Path
Language:HTML1 2 00
SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Language:R0 2 01
TREX
Tuning-free sparse variable selection with the TREX
Language:Jupyter Notebook7 3 02

muellsen's Repositories

muellsen/TREX
Tuning-free sparse variable selection with the TREX
Language:Jupyter Notebook7 3 02
muellsen/OceanProvinces
Exploratory Data Analysis for Data-driven Ocean Province Estimation
Language:HTML5 2 01
muellsen/PCM
Perspective M-estimation via proximal decomposition
Language:MATLAB5 3 00
muellsen/pCMALib
Parallel FORTRAN code for CMA-ES
Language:Fortran5 4 21
muellsen/MNA
MATLAB scripts and functions for Microbial Network Analysis (MNA)
Language:C++2 3 12
muellsen/command-line-tutorial
1 1 00
muellsen/pulsar
pulsar: Parallel Utilities for Lambda Selection along a Regularization Path
Language:HTML1 2 00
muellsen/SPIEC-EASI
Sparse and robust microbial network inference for microbiome data
Language:MATLAB1 3 0
muellsen/c-lasso
c-lasso: a Python package for constrained sparse regression and classification
Language:HTML0 2 00
muellsen/GPMicrobiome
Language:Stan0 2 00
muellsen/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Language:R0 2 01
muellsen/biodatascience
Homepage of Biomedical Statistics and Data Science group
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muellsen/cmap4r
R package to download, visualize, and process data from the Simons CMAP (https://cmap.readthedocs.io/en/latest/) database.
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muellsen/direct_contact
Code and files for direct contact prediction
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muellsen/dynamo
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muellsen/fabian-sp.github.io
A personal website.
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muellsen/GaussianAdaptation
2 0
muellsen/lasso-type-estimators
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muellsen/lassonet
Feature selection in neural networks
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muellsen/LpAdaptation_Code
Implementation of a stochastic algorithm for design centering and volume approximation
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muellsen/manifold-flow
Manifold-modeling flows (MFMFs)
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muellsen/NormCorr-manuscript
Code and data for reproducing NormCorr manuscript
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muellsen/OptML_course
EPFL Course - Optimization for Machine Learning - CS-439
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muellsen/R.4Cker
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muellsen/regression_on_landscapes
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muellsen/SCALNET
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muellsen/SPRING
Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
Language:R1 0
muellsen/UW-AMO.github.io
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
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muellsen/VIPUR
A method for identifying deleterious protein variation.
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muellsen/VolComp
2 0