muguading

muguading's Stars

• developmentseed/lonboard

  A Python library for fast, interactive geospatial vector data visualization in Jupyter.

  Language:Python67734

• giocomai/ganttrify

  Create beautiful Gantt charts with ggplot2

  Language:R66865

• RabbitBio/RabbitTClust

  RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches

  Language:C++454

• bluenote-1577/sylph

  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

  Language:Rust2046

• nextflow-io/awesome-nextflow

  A curated list of nextflow based pipelines

  57689

• gbouras13/dnaapler

  Reorients assembled microbial sequences

  Language:Python1063

• gbouras13/pharokka

  fast phage annotation program

  Language:Python15216

• libnano/primer3-py

  Simple oligo analysis and primer design

  Language:C17244

• theiagen/public_health_bioinformatics

  Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

  Language:WDL4018

• steven2358/awesome-generative-ai

  A curated list of modern Generative Artificial Intelligence projects and services

  6.1k679

• dylanlrrb/Please-Contain-Yourself

  A Docker tutorial written for people who don't actually know Docker already.

  Language:JavaScript6441.1k

• soedinglab/metaeuk

  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

  Language:C18023

• agmcfarland/r_phylogenetics_worshop

  Using ggtree to build phylogenetic trees

  Language:HTML4510

• observablehq/plot

  A concise API for exploratory data visualization implementing a layered grammar of graphics

  Language:HTML4.5k185

• nalarbp/graphsnp

  GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser

  Language:JavaScript71

• jameshadfield/phandango

  an interactive viewer for populations of bacterial genomes linked by a phylogeny

  Language:JavaScript11830

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python29324

• gtonkinhill/panaroo

  An updated pipeline for pangenome investigation

  Language:Python27333

• ANHIG/IMGTHLA

  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

  Language:Parrot21561

• MikeAxtell/ShortStack

  ShortStack: Comprehensive annotation and quantification of small RNA genes

  Language:Python9030

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k169

• colindaven/awesome-pangenomes

  A list of software for pangenomics

  9317

• llm-workflow-engine/llm-workflow-engine

  Power CLI and Workflow manager for LLMs (core package)

  Language:Python3.7k473

• mbhall88/MTB_masks

  A collection of genome masks for Mycobacterium tuberculosis

  2

• Kanaries/pygwalker

  PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

  Language:Python13.7k718

• arumugamlab/MIntO

  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data

  Language:Python1410

• raymondkiu/TOXIper

  Toxinotype assignment of Clostridium perfringens via ABRicate

  Language:Shell11

• raymondkiu/Infant-Clostridium-perfringens-Paper

  Source data files and sequence databases used in the paper

  Language:R2

• neherlab/treetime

  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

  Language:Jupyter Notebook23357

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser and genome visualization programs

  Language:TypeScript892112