muguading

muguading's Stars

• rapidsai/cudf

  cuDF - GPU DataFrame Library

  Language:C++8.6k1556.6k914

• hal9ai/awesome-dataviz

  :chart_with_upwards_trend: A curated list of awesome data visualization libraries and resources.

  3.8k15610427

• allmachinelearning/MachineLearning

  Machine learning resources

  3.5k30313968

• IndrajeetPatil/ggstatsplot

  Enhancing {ggplot2} plots with statistical analysis 📊📣

  Language:R2.1k45596190

• jtamames/SqueezeMeta

  A complete pipeline for metagenomic analysis

  Language:C387986081

• schneebergerlab/syri

  Synteny and Rearrangement Identifier

  Language:Cython351626238

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust201154211

• marbl/SALSA

  SALSA: A tool to scaffold long read assemblies with Hi-C data

  Language:Python1822016547

• wwood/singlem

  Novelty-inclusive microbial community profiling of shotgun metagenomes

  Language:Python137913518

• arangrhie/T2T-Polish

  Evaluation and polishing workflows for T2T genome assemblies

  Language:Shell112988

• hiruna72/squigualiser

  Visualise and analyse nanopore (ONT) raw signals

  Language:Python1114252

• david-barnett/microViz

  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

  Language:R107610511

• lskatz/awesome-bioinformatics-education

  resources for bioinformatics education

  773410

• EBI-Metagenomics/mettannotator

  Language:Python57555

• shandley/hecatomb

  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

  Language:Python5658612

• JensUweUlrich/Taxor

  Fast and space-efficient taxonomic classification of long reads

  Language:C++432132

• sars-cov-2-variants/lineage-proposals

  Repository to propose and discuss lineages

  Language:Python4382.3k3

• deepomicslab/SpecHLA

  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

  Language:C++393429

• WGLab/DeepMod2

  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

  Language:Jupyter Notebook374292

• lh3/minisv

  Lightweight mosaic/somatic SV caller for long reads (WIP)

  Language:JavaScript28323

• sbooeshaghi/single-cell-vocabulary

  25304

• paulstothard/helpful_links

  Links to resources related to bioinformatics and data analysis.

  24406

• treangenlab/lemur

  Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

  Language:Python22341

• mahsa-mousavi/eDNAFlow

  Language:Nextflow20538

• GTB-tbsequencing/mutation-catalogue-2023

  Language:Stata155104

• sihaohuanguc/NanoSPA

  Language:Python13242

• sharkLoc/rust-in-bioinformatics

  A collection of genomics software tools written in Rust

  7102

• Sam-Sims/kractor

  Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.

  Language:Rust6180

• ItokawaK/SampleSheetGenerator

  Easy-to-use sample sheet CSV generator for illumina sequencers by html/css and JS.

  Language:JavaScript3100

• blab/cholera

  Language:Jupyter Notebook1500