shandley/hecatomb

Issues

• Hecatomb not working ( secondary aa taxonomy)

  #110 opened 3 months ago by RarltyOne
  0

• HPC database installation problems

  #86 opened 6 months ago by lucyintheskyzzz
  31

• hecatomb combine not working

  #107 opened 6 months ago by gregorykrice
  3

• hecatomb.config.yaml

  #108 opened 6 months ago by wuhuiyun07
  1

• Placeholder of length limit

  #106 opened 6 months ago by KailunZM
  3

• Errors in newest version 1.3.0

  #104 opened 7 months ago by pengouy
  15

• out-of-memory error during population_assembly.flye, STAGE: repeat

  #99 opened 7 months ago by mihinduk
  2

• 98, 99% Failure Issue

  #100 opened 9 months ago by Key-man-fromArchive
  1

• ModuleNotFoundError: No module named 'attrmap'

  #101 opened 7 months ago by Eddylusamaki
  1

• add-host is failing on mask_host

  #98 opened a year ago by beardymcjohnface
  3

• bigtable.tsv column question

  #95 opened a year ago by mihinduk
  1

• Skip host removal

  #88 opened a year ago by beardymcjohnface
  1

• No rule to produce assembly

  #97 opened a year ago by mhmism
  5

• Filtering out host (human) genome beforehand?

  #96 opened a year ago by mhmism
  3

• assembly Contigs in results folder

  #83 opened a year ago by linsalrob
  1

• mmseqs: command not found

  #77 opened a year ago by alanorth
  7

• fastp not building

  #76 opened a year ago by beardymcjohnface
  8

• Missing new line in contigAnnotations.tsv

  #75 opened a year ago by mihinduk
  1

• Error in rule SECONDARY_AA_refactor_finalize

  #69 opened a year ago by Leran10
  1

• Solving OSerror Issues in a WSL Environment during the megahit step.

  #90 opened a year ago by Key-man-fromArchive
  2

• Can Hecatomb be used for searching not only viruses but also bacteria, fungi, and mycoplasma?

  #91 opened a year ago by Key-man-fromArchive
  1

• settings in '--configfile' file not passed to 'script:' rules

  #44 opened 2 years ago by beardymcjohnface
  1

• HPC Execution problem when changing to V.1.1.0

  #87 opened 2 years ago by luisalbertoc95
  4

• Database installation problems

  #64 opened 3 years ago by agudeloromero
  4

• I want to create a web app for hecatomb.

  #85 opened 2 years ago by Key-man-fromArchive
  1

• Check for the presence of an environment variable for location of databases

  #80 opened 2 years ago by linsalrob
  1

• readthedocs viral ecology R tutorial error fix

  #82 opened 2 years ago by RyCrobe
  1

• Enhancement: add whitelist to pre-processing

  #84 opened 2 years ago by dhoconno
  2

• flye crash in population_assembly step

  #78 opened 2 years ago by alanorth
  2

• Illumina_NextSeq_Run dies immediately

  #79 opened 2 years ago by mihinduk
  2

• Enhancement: Host

  #66 opened 3 years ago by mihinduk
  5

• crash unknown

  #74 opened 2 years ago by Vikash84
  1

• missing fields in outfile

  #68 opened 2 years ago by mihinduk
  5

• MANY missing output files; Input files updated by another job

  #65 opened 2 years ago by mihinduk
  1

• Error in secondary_nt_lca_table step

  #61 opened 2 years ago by Leran10
  11

• Error executing PRIMARY_NT_reformat

  #60 opened 2 years ago by shandley
  1

• Java Runtime Error when running test databases on VM

  #59 opened 2 years ago by blusoldier001
  43

• Partition phage and eukaryotic viruses

  #57 opened 3 years ago by shandley
  1

• Documentation

  #58 opened 2 years ago by mihinduk
  2

• Hecatomb v1.0.0.beta.2 crash

  #43 opened 2 years ago by mihinduk
  2

• taxonomy improvement

  #67 opened 3 years ago by mihinduk
  4

• Error: EOF marker is absent.There appear to be different numbers of reads in the paired input files

  #55 opened 3 years ago by Leran10
  5

• snakemake profiles

  #56 opened 3 years ago by linsalrob
  2

• hecatomb install giving error

  #52 opened 3 years ago by Vikash84
  5

• Problem with running

  #46 opened 3 years ago by wertick01
  11

• Run Offline

  #47 opened 3 years ago by gbouras13
  2

• Example Profile Broken

  #48 opened 3 years ago by gbouras13
  2

• does --configfile work with the download script?

  #45 opened 3 years ago by beardymcjohnface
  1

• kill switch

  #39 opened 3 years ago by mihinduk
  1

• updating hecatomb

  #40 opened 3 years ago by mihinduk
  1