shandley
Associate Professor @ Washington University in St. Louis.
Washington University School of MedicineSt. Louis
Pinned Repositories
bonsai
Bonsai: Fast, flexible taxonomic analysis and classification
CHIKV_16S_analysis
decatomb
Viral contig analysis (hecatomb-lite)
hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
HIV-Oral
Analysis of the oral bacterial microbiome by 16S amplicon analysis in HIV infected men
Microbiome-Analysis-Using-R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
rotabiome
Code used to generate the results of the rotabiome study
virus_isolate_sequencing
Miscellaneous scripts for handling Illumina sequencing of virus isolates.
shandley's Repositories
shandley/hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
shandley/Microbiome-Analysis-Using-R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
shandley/virus_isolate_sequencing
Miscellaneous scripts for handling Illumina sequencing of virus isolates.
shandley/decatomb
Viral contig analysis (hecatomb-lite)
shandley/HIV-Oral
Analysis of the oral bacterial microbiome by 16S amplicon analysis in HIV infected men
shandley/rotabiome
Code used to generate the results of the rotabiome study
shandley/bonsai
Bonsai: Fast, flexible taxonomic analysis and classification
shandley/CHIKV_16S_analysis
shandley/dotfiles
:wrench: .files, including ~/.macos — sensible hacker defaults for macOS
shandley/human_volunteer_rotabiome
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
shandley/durban_16S_tutorial
shandley/github-slideshow
A robot powered training repository :robot:
shandley/handley-lab
shandley/Hepb_Virume_Study
shandley/liver_injury_sbr_16S
shandley/neurodegeneration_16S
R code associated with neurodegeneration study
shandley/qc-for-hecatomb
shandley/viral_genome_sop
shandley/virion
The global virome in one network
shandley/WNV-antibiotics
West Nile Virus Infection in mice treated with vehicle or various antibiotics: https://www.ncbi.nlm.nih.gov/pubmed/29590614