Pinned Repositories
alphaPhage
alphaFold applications for phage PPIs
Koverage
Quickly get coverage statistics given reads and an assembly
metasnek
Misc functions for metagenomic pipelines
Nektool
Cookiecutter profile for making a NextFlow-based bioinformatics tool
Snaketool
Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
Snaketool-utils
Utils for Snaketool CLI
SpatialQC
SPERS
SPatialomics Enhanced Research Suite
Trimnami
Trim lots of metagenomics samples all at once
workshop2022
FAME Metagenomics workshop 2022
beardymcjohnface's Repositories
beardymcjohnface/Snaketool
Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
beardymcjohnface/Nektool
Cookiecutter profile for making a NextFlow-based bioinformatics tool
beardymcjohnface/Koverage
Quickly get coverage statistics given reads and an assembly
beardymcjohnface/SPERS
SPatialomics Enhanced Research Suite
beardymcjohnface/Trimnami
Trim lots of metagenomics samples all at once
beardymcjohnface/metasnek
Misc functions for metagenomic pipelines
beardymcjohnface/Snaketool-utils
Utils for Snaketool CLI
beardymcjohnface/workshop2022
FAME Metagenomics workshop 2022
beardymcjohnface/SpatialQC
beardymcjohnface/alphaPhage
alphaFold applications for phage PPIs
beardymcjohnface/beardymcjohnface.github.io
blog website
beardymcjohnface/bioconda-recipes
Conda recipes for the bioconda channel.
beardymcjohnface/clonePopSim
simulate a clonal population with snps/indels/inversions/translocations/deletions
beardymcjohnface/DBSCAN-SWA-1
beardymcjohnface/dinky
Dinky is a Jekyll theme for GitHub Pages
beardymcjohnface/ficture
beardymcjohnface/hecatomb-documentation
Documentation for Hecatomb (https://github.com/shandley/hecatomb)
beardymcjohnface/pacer-hackathon-2023
PaCER Hackathon 2023 documentation and attendee guide
beardymcjohnface/phables
Phables: from fragmented assemblies to high-quality bacteriophage genomes
beardymcjohnface/PharokkaGoBRRRT
Run Megapharokka on lots of contigs
beardymcjohnface/Phicore
work in progress. but got to do with phage genomes because they are awesome!
beardymcjohnface/ProphagePredictionComparisons
Comparisons of multiple different prophage predictions
beardymcjohnface/reneo
🦠🧬 Unraveling Viral Genomes from Metagenomes
beardymcjohnface/SAW
beardymcjohnface/snakemake-intro-pt2
files to start part 2 of my intro to snakemake
beardymcjohnface/Snaketool-argparse
Cookiecutter profile for making a Snakemake-based bioinformatics tool
beardymcjohnface/spae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!