/metasnek

Misc functions for metagenomic pipelines

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MetaSnek

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Misc functions for metagenomic pipelines

fastq_finder

Return a python dictionary of sample names and fasta/q files from a directory or a TSV file. If given a directory, sample names will be everything upto the first match for "_R1|_R2|_S". Write a TSV file based on your dictionary. More information and examples on here