mummer4/mummer

An error is reported when run-mummer1 and run-mummer3 are executed.

Tom-python0121 opened this issue · 0 comments

Tom-python0121 commented

see:

Steps to reproduce the issue

[root@localhost spack-src]# ls
26695_J99.mums    aux_bin                    ChangeLog    delta-filter  exact-tandems  LICENSE   mgaps       nucmer       README        run-mummer3  show-coords  show-tiling
ACKNOWLEDGEMENTS   combineMUMs  dnadiff       gaps           Makefile  mummer      nucmer2xfig  repeat-match  scripts      show-diff    src
annotate   COPYRIGHT    docs          INSTALL        mapview   mummerplot  promer       run-mummer1   show-aligns  show-snps
[root@localhost spack-src]# run-mummer1 docs/web/examples/data/B_anthracis_contigs.fasta docs/web/examples/data/B_anthracis_Mslice.fasta out.align -r
-bash: /home/all_spack_env/spack/opt/spack/linux-centos8-aarch64/gcc-8.4.1/mummer-3.23-t5pqopqrvvdt2kdzjiujwwkxhkyylkqs/bin/run-mummer1: -f: bad interpreter: No such file or directory
[root@localhost spack-src]# run-mummer3 docs/web/examples/data/B_anthracis_contigs.fasta docs/web/examples/data/B_anthracis_Mslice.fasta out.align -r
-bash: /home/all_spack_env/spack/opt/spack/linux-centos8-aarch64/gcc-8.4.1/mummer-3.23-t5pqopqrvvdt2kdzjiujwwkxhkyylkqs/bin/run-mummer3: -f: bad interpreter: No such file or directory

How do I solve this problem?

Information on your system

[root@localhost ~]# spack debug report

  • Spack: 0.16.1-1624-a0b5dcca3c
  • Python: 3.6.8
  • Platform: linux-centos8-aarch64
  • Concretizer: original