mummer4/mummer

Issues

• Nucmer issue: taking forever or alignment very fragmented

  #214 opened 2 months ago by BioJules
  0

• mummerplot chromosome is not sorted correctly

  #213 opened 3 months ago by JeanQ2020
  0

• mummerplot defined(%hash) issue

  #212 opened 3 months ago by sheraghty
  0

• mummer4_Inappropriate ioctl for device

  #211 opened 3 months ago by hjt1129
  0

• defective out.sam fomat?

  #210 opened 4 months ago by yaximik
  1

• delta-filter no error and no results

  #198 opened a year ago by 15132522078
  3

• How to install the develop branch, I get a "no makefile" error

  #209 opened 5 months ago by margaretc-ho
  3

• ERROR: Could not parse delta file, out.delta error no: 002

  #194 opened 2 years ago by ylevmirom
  1

• terminate called after throwing an instance of 'std::length_error

  #208 opened 5 months ago by fka21
  0

• output .1coord header

  #207 opened 6 months ago by adriludwig
  0

• Mummerplot fails with some .mum files due to whitespace issue

  #206 opened 6 months ago by margaretc-ho
  1

• wrong size chromosome estimate

  #205 opened 7 months ago by PavelEG
  1

• Cannot compile (Fedora 39): make[1]: *** [Makefile:2087: src/essaMEM/sparseSA.lo] Error 1

  #204 opened 7 months ago by MrTomRod
  4

• Added #include <cstdint> to allow compiling with newer versions of gcc

  #203 opened 7 months ago by tbenavi1
  2

• mummerplot command shows '-t' for both 'title' and 'terminal'

  #201 opened 8 months ago by splaisan
  4

• nucmer "First character must be a '>'"

  #202 opened a year ago by juliadouglasf
  1

• Manually ordering contigs/chromosomes with mummerplot

  #193 opened 2 years ago by kcl58759
  2

• Failed to make on ubuntu 22.04

  #192 opened 2 years ago by jhcuarta
  1

• `dnadiff` throws an error

  #197 opened a year ago by MahshidF1991
  0

• Nucmer can only call ten threads

  #195 opened a year ago by mrwangyz
  2

• ERROR: Could not parse delta file, shipai.filter.delta error no: 400

  #196 opened a year ago by Fei5536
  0

• show-snps can't handle whitespace in delta file path

  #168 opened 3 years ago by not-a-feature
  0

• Mummerplot kills Docker

  #190 opened 2 years ago by joshfactorial
  1

• no results

  #163 opened 3 years ago by dongyangzheng
  2

• nucmer won't run

  #191 opened 2 years ago by peflanag
  2

• WARNING: Unable to run 'false out.gp', Inappropriate ioctl for device

  #174 opened 3 years ago by bauder97
  1

• Mummer 4.0 on conda

  #180 opened 3 years ago by yihualiued
  1

• Specifying a temp dir? (for show-tiling, or in general)

  #189 opened 2 years ago by fishercera
  0

• Is it possible to count the number of re-arrangement between two genome using the output of nucmer ?

  #188 opened 2 years ago by Karimi-81
  0

• error running mummerplot

  #183 opened 2 years ago by emmannaemeka
  1

• Horizontal lines near the end of ech chromosome

  #187 opened 2 years ago by bd904
  0

• is it suitable for the very big genome?

  #186 opened 2 years ago by AlisaGU
  0

• macOS Monterey and mummer4

  #185 opened 2 years ago by bmillerlab
  0

• how to use the delta2vcf tool

  #184 opened 2 years ago by hcph
  0

• How can I get the align with the specified coordinates?

  #182 opened 2 years ago by CAShuangchao
  0

• Failed to make a SWIG binding installation from mummer-4.0.0beta2

  #181 opened 2 years ago by alihamraoui
  4

• gnuplot: error while loading shared libraries: libjpeg.so.8:

  #179 opened 3 years ago by marco91sol
  0

• delta-filter takes a lot of time and nothing happened when I used option -1

  #162 opened 3 years ago by pjx1990
  4

• question of show-snps

  #178 opened 3 years ago by zjwang6
  0

• dnadiff output questions

  #177 opened 3 years ago by pc395
  0

• More than one alignment on the same path

  #176 opened 3 years ago by rsharris
  0

• seeking clarification on perl5 requirement

  #175 opened 3 years ago by rsharris
  0

• The problem about make

  #172 opened 3 years ago by wbc569668815
  1

• How should I understande the "AlignedBases" from the dnadiff.report file

  #173 opened 3 years ago by fsq9451
  0

• snp format

  #171 opened 3 years ago by liufy11
  0

• Mummerplot in MUMMER/4.0.0beta2 default colors

  #169 opened 3 years ago by gitcruz
  0

• What exactly is a cluster? My promer output is too small and trying to troubleshoot

  #167 opened 3 years ago by SheepwormJM
  0

• What is meant by the number of "sampled suffix positions"?

  #166 opened 3 years ago by krinsman
  0

• The meaning of "--maxmatch" and "--mum"

  #165 opened 3 years ago by Nonodayo
  1

• An error is reported when run-mummer1 and run-mummer3 are executed.

  #164 opened 3 years ago by Tom-python0121
  0