mummer4/mummer

no results

dongyangzheng opened this issue · 2 comments

dongyangzheng commented

Hi professor
I am using nucmer for wheat genome compare with a 500GB RAM machine . but there is nothing output for 3 days .
Thanks

JiaoBingke commented

If you use default parameters of nucmer? When I aligned two soybean genomes, I used --maxmatch parameter. However, there was no result after 5 days of running. Then I used default parameters of nucmer, like "nucmer refgenome qrygenome -t 20 -p nucmer_default_para". The task finished after 2 hours.

hengbingao commented

I also meet the same question when I use mummer to align wheat genome, there are no results in my output file.