mummer4/mummer

Issues

• mummerplot report error "integer overflow; change to floating point"

  #161 opened 3 years ago
  1

• Reusing suffix-tree: splitting analysis to "indexing" and "mapping"

  #160 opened 3 years ago
  0

• Meaning of "min_len" parameter when constructing sparseSA?

  #159 opened 4 years ago
  0

• show-coords error on MacOS: "Could not parse delta file", "error no: 400"

  #158 opened 4 years ago
  5

• Can't use 'defined(%hash)'

  #157 opened 4 years ago
  0

• the difference between -r -q and -l using delta-filter

  #156 opened 4 years ago
  0

• About mean of result

  #155 opened 4 years ago
  0

• Chromosome coordinates with matching genotypes

  #154 opened 4 years ago
  1

• mummer for SV call from bacterial genome

  #153 opened 4 years ago
  0

• Suggestion for Delta filter

  #152 opened 4 years ago
  0

• ERROR: Query input does not match delta file

  #151 opened 4 years ago
  0

• delta-filter no response

  #149 opened 4 years ago
  2

• nucmer failed

  #148 opened 4 years ago
  0

• test/sam.sh test_md5 FAILED

  #147 opened 4 years ago
  0

• Mummerplot 4.0.0rc1 "false -geometry 500x500+0+0 -title mummerplot out.gp"

  #146 opened 4 years ago
  2

• feature request: read gzipped genomes

  #145 opened 4 years ago
  4

• FYI: dotplot-style visualizations in Python for nucmer output

  #144 opened 4 years ago
  3

• negative strand alignment of sam output format is confusing.

  #143 opened 4 years ago
  7

• Where are the newest docs files?

  #141 opened 4 years ago
  1

• mummer4 installation

  #140 opened 4 years ago
  2

• Question about the script delta2vcf

  #139 opened 4 years ago
  0

• 4.0.0Beta3: cannot find install-sh

  #138 opened 4 years ago
  1

• mummer matches are sometimes not unique

  #137 opened 4 years ago
  1

• nucmer --threads=1 Using >600% CPU

  #136 opened 4 years ago
  1

• PAF cannot be converted to MAF

  #135 opened 4 years ago
  1

• Some confusion about mummerplot

  #134 opened 4 years ago
  2

• Split query file and parallel on a cluster.

  #133 opened 4 years ago
  1

• Latest version can not use multiple cores.

  #132 opened 4 years ago
  2

• no mapview

  #131 opened 5 years ago
  0

• SAM file format output

  #130 opened 5 years ago
  4

• dnaniff aborted at start of run

  #129 opened 5 years ago
  2

• nucmer info needed for a number of arguments

  #128 opened 5 years ago
  0

• speedup 'delta-filter' on very large nucmer delta inputs

  #127 opened 5 years ago
  6

• adjusting mummerplot dot size

  #126 opened 5 years ago
  2

• show-snps could not find the name of the sequence in the reference file

  #125 opened 5 years ago
  3

• @BIN_DIR@/mummer: not found @LIBEXEC_DIR@/mgaps: not found @BIN_DIR@/combineMUMs: not found

  #124 opened 5 years ago
  3

• @BIN_DIR@/mummer: not found@LIBEXEC_DIR@/mgaps: not found @BIN_DIR@/combineMUMs: not found

  #123 opened 5 years ago
  0

• mummerplot error--Illegal division by zero

  #122 opened 5 years ago
  4

• why SNPs called from a subset delta file were not a subset of that called from a fullset delta file?

  #121 opened 5 years ago
  1

• nucmer giving multiple primary alignments for SAM output

  #120 opened 5 years ago
  0

• Nucmer error

  #119 opened 5 years ago
  0

• Nucmer appears to move data from one contig to another

  #118 opened 5 years ago
  1

• the default value for "--threads" seems highly dangerous

  #117 opened 5 years ago
  0

• Error: Multiple query file is only supported with the SAM output format

  #116 opened 5 years ago
  4

• promer of mummer4-4.0.0beta2 failed to compile mac

  #115 opened 5 years ago
  2

• Failed to run nucmer, aborting.

  #114 opened 5 years ago
  6

• Cannot disable -c for slow-tiling

  #113 opened 5 years ago
  1

• Visualization of png plot

  #111 opened 5 years ago
  1

• Nucmer does not identify terminal matches when they are perfectly identical

  #110 opened 5 years ago
  0

• undocumented nucmer option -G, --genome

  #109 opened 4 years ago
  5