Pinned Repositories
array_sites_select
as_analysis
A complete Snakemake pipeline for detecting allele specific expression
biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
bioinformatics-hacks
Scripts for miscelleneous bioinformatics tasks
common_scripts
my bin directory
Managing_Your_Biological_Data_with_Python_3
<<Managing Your Biological Data with Python>> wirtten in Python 3
Mungbean_PlantCom
Liu C, Wang Y, Peng J, et al. High-quality genome assembly and pan-genome studies facilitate genetic discovery in mung bean and its improvement. Plant Commun. 2022;3(6):100352. doi:10.1016/j.xplc.2022.100352
rice_reseq
Rice resequencing workflow for RAP-DB
svtools
Tools for processing and analyzing structural variants.
Y900_heterosis
Dissecting the genetic basis of the heterosis of Y900 by genome assembly and transcriptome profiling
pjx1990's Repositories
pjx1990/Mungbean_PlantCom
Liu C, Wang Y, Peng J, et al. High-quality genome assembly and pan-genome studies facilitate genetic discovery in mung bean and its improvement. Plant Commun. 2022;3(6):100352. doi:10.1016/j.xplc.2022.100352
pjx1990/as_analysis
A complete Snakemake pipeline for detecting allele specific expression
pjx1990/Y900_heterosis
Dissecting the genetic basis of the heterosis of Y900 by genome assembly and transcriptome profiling
pjx1990/array_sites_select
pjx1990/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
pjx1990/biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
pjx1990/common_scripts
my bin directory
pjx1990/bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
pjx1990/DNNGP
DNNGP: Deep neural network for genomic prediction
pjx1990/Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
pjx1990/File_Conversions
Scripts to convert between file formats for various analyses
pjx1990/funRiceGenes
The knowledge of cloned rice genes lost in the information of rice functional genomics studies
pjx1990/lcwgs-guide-tutorial
pjx1990/lihang-code
《统计学习方法》的代码实现
pjx1990/maizeG2P
pjx1990/MutMap
MutMap pipeline to identify causative mutations responsible for a phenotype
pjx1990/MyBlogImage
pjx1990/mytools
pjx1990/nanopore-sv
The detection of structural variations in maize population
pjx1990/Pahang-associated-data
This repository contains all the scripts used to produce the paper's figures
pjx1990/ppsPCP
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
pjx1990/PyVCF
A Variant Call Format reader for Python.
pjx1990/QTN_scripts
pjx1990/Quantitative-Genetics
pjx1990/RNAseq_pipeline
pjx1990/TOP
pjx1990/vcf2hmp
convert VCF to HMP format
pjx1990/vsdemo_py
pjx1990/xuzhougeng_scripts
pjx1990/Zhangxingtan_script
my commonly used perl script