peflanag

Molecular Microbiologist new to the world of bioinformatics

Dublin, Ireland

Pinned Repositories

spades
SPAdes Genome Assembler
Language:C++735 32 1.1k134
conda-build
Commands and tools for building conda packages
Language:Python378 51 2.6k419
kraken2
The second version of the Kraken taxonomic sequence classification system
Language:C++702 29 823269
abritamr
A pipeline for running AMRfinderPlus and collating results into functional classes
Language:Python67 13 3014
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Language:Perl40 13 8522
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Language:C++1.9k 49 512332
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
10

peflanag/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
10