Pinned Repositories
3DCellComposer
3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation
cellorganizer
Repository for CellOrganizer v2.6 and above.
cellorganizer_old
CellOrganizer public repository
CellSegmentationEvaluator
Evaluating the quality of a cell segmentation method without reference.
CODEXPanelOptimization
docker-cellorganizer
CellOrganizer for Docker
docker-cellorganizer-jupyter-notebook
CellOrganizer on Jupyter Notebook
docker-matlabmcr2016b
:whale: Matlab MCR 2016b
docker-matlabmcr2018b
:whale: Matlab MCR 2018b
docker-matlabmcr2018b-jupyter
:whale: Matlab MCR 2018b + Jupyter Notebook
Murphy Lab's Repositories
murphygroup/CellSegmentationEvaluator
Evaluating the quality of a cell segmentation method without reference.
murphygroup/docker-matlabmcr2018b-jupyter
:whale: Matlab MCR 2018b + Jupyter Notebook
murphygroup/cellorganizer
Repository for CellOrganizer v2.6 and above.
murphygroup/docker-cellorganizer
CellOrganizer for Docker
murphygroup/3DCellComposer
3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation
murphygroup/cellorganizer_old
CellOrganizer public repository
murphygroup/CODEXPanelOptimization
murphygroup/docker-matlabmcr2018b
:whale: Matlab MCR 2018b
murphygroup/cellorganizer-documentation_old
murphygroup/cellorganizer-jupyter-notebooks
jupyter notebooks for workshop
murphygroup/cellorganizer-python
Python wrapper for CellOrganizer binaries
murphygroup/CytoSpatio
CytoSpatio: Learning Cell Type Spatial Relationships
murphygroup/docker-cellorganizer-jupyter-notebook
CellOrganizer on Jupyter Notebook
murphygroup/models
murphygroup/models2table
murphygroup/phenocycler-pipeline
Forked from celldive/mibi to create new pipeline for phenocycler
murphygroup/singularity-cellorganizer
:whale: Script to build a Singularity image for CellOrganizer
murphygroup/BioActive
BioActive provides end-to-end capabilities for Automated Science: definition of an experimental campaign, modeling using existing data, active machine learning to select experiments, and protocols for driving laboratory automation.
murphygroup/cellorganizer-docker-images
default image set to be used in combination with cellorganizer deployed on docker
murphygroup/cellorganizer-galaxy-tools
CellOrganizer tools and scripts for Galaxy Project - gitlab import
murphygroup/ChenMurphy2DSegEvalRRA
murphygroup/ChenMurphy3DCellComposerRRA
This is the reproducible research archive that reproduces all results and figures in the manuscript "3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation"
murphygroup/ChenMurphyCytoSpatioRRA
This is the reproducible research archive that reproduces all results and figures in the manuscript "CytoSpatio: Learning cell type spatial relationships using multirange, multitype point process models".
murphygroup/docker-matlabmcr2017a
:whale: Matlab MCR 2017a
murphygroup/matlabmcr2019b-jupyter
murphygroup/PearsonGroupImages
murphygroup/SLIC
Subcellular Localization Image Classifier (SLIC)
murphygroup/SPRM
murphygroup/SPRM-RRA
Reproducable Research Archive for SPRM manuscript
murphygroup/TetAlyze