Add OME-TIFF (actually OME-XML) normalization step before SPRM proper
Opened this issue · 0 comments
mruffalo commented
New versions of the tifffile and aicsimagio libraries have trouble reading some OME-TIFF images, including the outputs of our CODEX pipeline and 3D IMC datasets.
Add a pipeline step before SPRM that uses bfconvert to normalize the OME-XML metadata.