This is the main directory for the TX-TL cell-free expression toolbox. The subdiretories here contain models and code that can be used in working with the TX-TL system. Contents: ChangeLog - list of changes that have been made Makefile - makefile for creating distributions Pending - (obsolete) list of pending tasks. See wiki version aux/ - auxiliary function components/ - component models core/ - core functionality data/ - default directory for wetlab experiment data doc/ - toolbox documentation examples/ - examples that use the toolbox models/ - (obsolete) old directory structure. To be deleted. modules/ - additional modules to the toolbox (e.g. parameter estimation) tests/ - unit tests tmp/ - temporarily stored filled (mostly script generated) txtl_init.m - script to initalize toolbox (mainly setting up the path) unused/ - old files that are no longer used and scheduled to be deleted