/bamsnap

Primary LanguagePythonMIT LicenseMIT

BamSnap

BamSnap: a lightweight command-based visualization tool for sequencing reads in BAM files

For more details, see BamSnap Documentation.

Installation

Prerequisites

Install with pip

pip install bamsnap

Install with github

git clone https://github.com/parklab/bamsnap
cd bamsnap
python setup.py install

Usage

Simple usage

$ bamsnap -bam test.bam -pos 1:7364529 -out test.png

For more details, see BamSnap Documentation.

Example Use Case