mvinyard
Co-founder, working at the intersection of deep learning and cell dynamics
Harvard University, Broad Institute, MGHCambridge, MA.
Pinned Repositories
ann_nmf
AnnData wrapper of the ARD-NMF module from SignatureAnalyzer
AnnDataQuery
Fetch and format data matrices from AnnData
annoyance
AnnData-compatible wrapper of Spotify's annoy library.
ArchR-h5ad
Parse ArchR arrow files to anndata h5ad
Cell-Dynamics-Seminar
An introduction and overview of cell dynamics analyses for the CCB Skills Seminar
GTFast
Lift annotations from a GTF file to an adata object.
lightning-tutorial
PyTorch-Lightning Tutorial
torch-adata
Create PyTorch Datasets from AnnData
torch-nets
Compose PyTorch Neural Networks
vintools
Michael Vinyard's utilities
mvinyard's Repositories
mvinyard/torch-adata
Create PyTorch Datasets from AnnData
mvinyard/ArchR-h5ad
Parse ArchR arrow files to anndata h5ad
mvinyard/lightning-tutorial
PyTorch-Lightning Tutorial
mvinyard/Cell-Dynamics-Seminar
An introduction and overview of cell dynamics analyses for the CCB Skills Seminar
mvinyard/GTFast
Lift annotations from a GTF file to an adata object.
mvinyard/ann_nmf
AnnData wrapper of the ARD-NMF module from SignatureAnalyzer
mvinyard/annoyance
AnnData-compatible wrapper of Spotify's annoy library.
mvinyard/cell-tools
Single-Cell Data Analysis Tools
mvinyard/mvinyard
PhD Student @ Harvard University
mvinyard/AnnDataQuery
Fetch and format data matrices from AnnData
mvinyard/torch-nets
Compose PyTorch Neural Networks
mvinyard/ABCParse
A better base class that handles parsing local arguments.
mvinyard/autodevice
Automatically assign devices in-line with pytorch code
mvinyard/brownian-diffuser
Forward integrate torch neural networks
mvinyard/cell-ann
Cell approximate nearest neighbors (ANN)
mvinyard/cell-neighbors
Neighbor graphs for single-cell data (AnnData)
mvinyard/cellplots
Plotting assistant and resources
mvinyard/flexinet
flexinet: flexible torch neural network composition
mvinyard/genomeIO
Genomics-catered read / write functions
mvinyard/keops
KErnel OPerationS, on CPUs and GPUs, with autodiff and without memory overflows
mvinyard/licorice
A python utility library for creating and printing more elegant strings.
mvinyard/neural-diffeqs
Instantiate neural differential equations with ease
mvinyard/pool-sharq
Python wrapper for the Broad Institute GPP's poolq software
mvinyard/py-pkg-logging
pypkg-logging
mvinyard/pyLaCroix
A python color palette for those that love sparkled beverages.
mvinyard/python-developer-kit
Python nuts and bolts
mvinyard/seq-toolkit
Basic functions for genomic sequence manipulation
mvinyard/sglib
guideID: python tools to find PAM sequences
mvinyard/vinplots
Michael E. Vinyard's python plotting assistant
mvinyard/WebFiles
Download files hosted on the internet and parse with python