scripts fail in download ?
Opened this issue · 3 comments
xgnusr commented
failed: 1024 at download_archaea.pl line 49, line 412.
failed: 1024 at download_bacteria.pl line 49, line 3824.
failed: 1024 at download_viral.pl line 49, line 854.
Thanks in advance ............
mw55309 commented
Do you have wget on your system?
Do you have write access to the folder you're in?
Rohit-Satyam commented
I am facing the same issue with bacteria.pl script where out of 2 million genomes I could only download 46K. Besides Protozoan genomes are only 96. Using the scripts provided here
55.1_ASM1421705v1, , , naGCF_014217075.1, PRJNA224116, SAMN14342459, , na, 562, 562, Escherichia coli, strain=RM-103-CS, , latest, Chromosome, Major, Full, 2020/08/17, ASM1421707v1, icddr,b, GCA_014217075.1, identical, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/217/075/GCF_014217075.1_ASM1421707v1, , , naGCF_014217095.1, PRJNA224116, SAMN14342460, , na, 562, 562, Escherichia coli, strain=RM-103-MS, , latest, Chromosome, Major, Full, 2020/08/17, ASM1421709v1, icddr,b, GCA_014217095.1, identical, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/217/095/GCF_014217095.1_ASM1421709v1, , , naGCF_014217115.1, PRJNA224116, SAMN14342461, , na, 562, 562, Escherichia coli, strain=RM-103-WU, , latest, Chromosome, Major, Full, 2020/08/17, ASM1421711v1, icddr,b, GCA_014217115.1, identical, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/217/115/GCF_014217115.1_ASM1421711v1, , , naGCF_014219485.1, PRJNA224116, SAMN15746396, JACLFO000000000.1, na, 562, 562, Escherichia coli, strain=EC4, , latest, Scaffold, Major, Full, 2020/08/17, ASM1421948v1, The Hong Kong Polytechnic University, GCA_014219485.1, identical, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/219/485/GCF_014219485.1_ASM1421948v1, , , naGCF_014219525.1, PRJNA224116, SAMN15746395, JACLFN000000000.1, na, 562, 562, Escherichia coli, strain=EC3, , latest, Scaffold, Major, Full, 2020/08/17, ASM1421952v1, The Hong Kong Polytechnic University, GCA_014219525.1, identical, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/219/525/GCF_014219525.1_ASM1421952v1, , , naGCF_014219545.1, PRJNA224116, SAMN15746393, JACLFL000000000.1, na, 562, 562, Escherichia coli, strain=EC1, , latest, Scaffold, Major, Full, 2020/08/17, ASM1421954v1, The Hong Kong Polytechnic University, GCA_014219545.1, identical, https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/219/545/GCF_014219545.1_ASM1421954v1, , , nafailed: 1024 at download_bacteria.pl line 62, <IN> line 46255.
I have enough space on my system I can assure you that and writing permission with wget as well
Filesystem Size Used Avail Use% Mounted on
/dev/sda1 7.3T 4.2T 2.8T 61% /home
Rohit-Satyam commented