mwcole

Pinned Repositories

• actflowmapping

  Data analysis code associated with Cole et al. (2016), Nature Neuroscience

  Language:MATLAB6204

• ActflowToolbox

  The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

  Language:Python3512110

• ColeAnticevicNetPartition

  Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

  Language:C66132520

• CombinedFC

  Repository for Sanchez-Romero, R., & Cole, M. W. (2021). "Combining multiple functional connectivity methods to improve causal inferences". Journal of cognitive neuroscience, 33(2), 180-194. https://doi.org/10.1162/jocn_a_01580

  Language:Jupyter Notebook21706

• informationtransfermapping

  Public code release for Ito, Kulkarni, Schultz, Mill, Chen, Solomyak, Cole (2017)

  Language:Jupyter Notebook7404

• LatentFC_release

  Code release for McCormick et al. (2022): McCormick EM*, Arnemann KL*, Ito T, Hanson SJ, Cole MW (2022). "Latent functional connectivity underlying multiple brain states". Network Neuroscience; 6 (2): 570–590 doi:10.1162/netn_a_00234 [* = equal contribution]

  Language:Jupyter Notebook1200

• MultipleComparisonsPermutationTesting

  Code to perform FWE-correction for multiple comparisons using permutation testing (see Nichols & Holmes, 2001)

  Language:MATLAB7313

• simplesims

  A simple simulation framework for testing brain functional connectivity methods

  Language:R3201

• TaskFCActflow_release

  Code release for Cole et al. (2021) "The functional relevance of task-state functional connectivity", Journal of Neuroscience

  Language:Jupyter Notebook1302

• TaskFCRemoveMeanActivity

  Code for running simulations and data analysis from: Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C (2019). "Task activations produce spurious but systematic inflation of task functional connectivity estimates". NeuroImage. doi:10.1016/j.neuroimage.2018.12.054 https://authors.elsevier.com/a/1YNWs3lc~r3Jbx

  Language:Roff11303

mwcole's Repositories