Pinned Repositories
ananke
Ananke: Clustering marker gene data by time-series patterns
Ananke2
Ananke2: A Python package for generating succinct indexes of microbial community structure
Ananke_PeerJ
Scripts useful for reproducing the results in the Ananke manuscript published in PeerJ.
biom-format
The Biological Observation Matrix (BIOM) Format Project
BMCMicrobiology_Preterm_Birth
An in-progress analysis of the neonatal microbiome. This repository holds QIIME artifacts and Jupyter notebooks.
core
Freesewing is an open source platform for made-to-measure sewing patterns
Experimental_Gingivitis
Data and scripts for an in-progress analysis of microbial taxonomic shifts in experimental gingivitis.
QUOREM
QUOREM: Query, Unify, and Organize Research on the Ecology of Microorganisms
try_git
VAware
mwhall's Repositories
mwhall/Ananke2
Ananke2: A Python package for generating succinct indexes of microbial community structure
mwhall/QUOREM
QUOREM: Query, Unify, and Organize Research on the Ecology of Microorganisms
mwhall/try_git
mwhall/Ananke_PeerJ
Scripts useful for reproducing the results in the Ananke manuscript published in PeerJ.
mwhall/biom-format
The Biological Observation Matrix (BIOM) Format Project
mwhall/BMCMicrobiology_Preterm_Birth
An in-progress analysis of the neonatal microbiome. This repository holds QIIME artifacts and Jupyter notebooks.
mwhall/core
Freesewing is an open source platform for made-to-measure sewing patterns
mwhall/Experimental_Gingivitis
Data and scripts for an in-progress analysis of microbial taxonomic shifts in experimental gingivitis.
mwhall/VAware
mwhall/data
Data API for freesewing
mwhall/demo
Stand-along version of the freesewing demo
mwhall/ExpressBetaDiversity
Taxon- and phylogenetic-based beta diversity measures.
mwhall/github-slideshow
A robot powered training repository :robot:
mwhall/JDR_Refractory_Periodontitis
Data files for an in-progress manuscript on Refractory Periodontitis.
mwhall/merge-conflicts
mwhall/metahcr_v1
MetaHCR - Metagenomics on Hydrocarbon Resources
mwhall/MolEcol_Arctic_Soil
Scripts and data files for the bulk of the analysis for an under-review manuscript surveying the effect of depth on the microbial community of Arctic soils.
mwhall/mwhall.github.io
mwhall/mygithubpage
mwhall/Pairiscope
A package that leverages bloom filters to store discretized microbial pair relationships in a relatively small memory footprint
mwhall/PeerJ_Culex_nigripalpus
Data and scripts for an in-progress analysis of the Culex nigripalpus microbiome from Floridian mosquitoes.
mwhall/photobooth
mwhall/q2-dada2
QIIME 2 plugin wrapping DADA2
mwhall/q2-plotly
mwhall/q2_ananke
Time-series clustering -- now for QIIME2!
mwhall/scavenger
mwhall/seqan
SeqAn's official repository.
mwhall/site
The freesewing website
mwhall/Useful_QIIME2_Datasets
Just as it says on the tin.