Pinned Repositories
abodoutlier
Angle-based outlier detection
ascat
ASCAT copy number R package
ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
bioconda-recipes
Conda recipes for the bioconda channel.
cellularity_enigma
Investigating the effects of cellularity on the biological pathways inferered from breast tumours
cellularity_enigma_1
CoExpNets
Co-expression network management based on WGCNA + k-means
ConsensusClusterPlus
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.
DMRcate_DB
Custom version of DMRcate package
EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
mxdeluca's Repositories
mxdeluca/abodoutlier
Angle-based outlier detection
mxdeluca/ascat
ASCAT copy number R package
mxdeluca/ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
mxdeluca/bioconda-recipes
Conda recipes for the bioconda channel.
mxdeluca/cellularity_enigma
Investigating the effects of cellularity on the biological pathways inferered from breast tumours
mxdeluca/cellularity_enigma_1
mxdeluca/CoExpNets
Co-expression network management based on WGCNA + k-means
mxdeluca/ConsensusClusterPlus
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.
mxdeluca/DMRcate_DB
Custom version of DMRcate package
mxdeluca/EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
mxdeluca/InfiniumPurify
R package for DNA methylation analysis
mxdeluca/KataegisPortal
An R package for detecting and visualizing Kataegis events
mxdeluca/pandaR
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pandaR.
mxdeluca/PennCNV
Copy number vaiation detection from SNP arrays
mxdeluca/rtg-tools
RTG Tools: Utilities for accurate VCF comparison and manipulation
mxdeluca/scarHRD
mxdeluca/SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
mxdeluca/SigProfilerMatrixGeneratorR
R wrapper for utilizing the SigProfilerMatrixGenerator framework