mylRalph

mylRalph's Stars

• wengong-jin/abdockgen

  Language:Python10523

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.2k156

• charnley/rmsd

  Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

  Language:Python500114

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.8k544

• facebookresearch/dino

  PyTorch code for Vision Transformers training with the Self-Supervised learning method DINO

  Language:Python6.4k909

• pinder-org/pinder

  PINDER: The Protein INteraction Dataset and Evaluation Resource

  Language:Python927

• chloechsu/combining-evolutionary-and-assay-labelled-data

  Language:Python5612

• THUNLP-MT/GET

  This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).

  Language:Python243

• NKI-AI/STAPLER

  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.

  Language:Python252

• evolutionaryscale/esm

  Language:Python1.3k141

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.5k203

• DeepGraphLearning/DiffPack

  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

  Language:Python756

• bowen-gao/DrugCLIP

  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening

  Language:Python696

• HansiZeng/RIPOR

  [WWW 2024] The official repo for paper "Scalable and Effective Generative Information Retrieval".

  Language:Python525

• chatanywhere/GPT_API_free

  Free ChatGPT API Key，免费ChatGPT API，支持GPT4 API（免费），ChatGPT国内可用免费转发API，直连无需代理。可以搭配ChatBox等软件/插件使用，极大降低接口使用成本。国内即可无限制畅快聊天。

  Language:Python24.4k1.9k

• MuiseDestiny/zotero-gpt

  GPT Meet Zotero.

  Language:TypeScript5.2k211

• state-spaces/mamba

  Mamba SSM architecture

  Language:Python13.2k1.1k

• UniBind/UniBind

  Language:Python312

• BytedProtein/ByProt

  Language:Python15916

• anton-bushuiev/PPIRef

  Dataset and package for working with protein-protein interactions in 3D

  Language:Jupyter Notebook848

• anton-bushuiev/PPIformer

  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)

  Language:Jupyter Notebook444

• kynehc/clone_anonymous_github

  clone/download repositories from https://anonymous.4open.science/

  Language:Python8521

• luost26/RDE-PPI

  :mountain: Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)

  Language:Python5313

• EureKaZhu/DiffAffinity

  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)

  Language:Jupyter Notebook293

• bigwiv/Biopython-cn

  Biopython Tutorial Chinese Translation

  Language:Python228117

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.5k6.4k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python12.8k2.3k

• waqarhanif-biocode/optimalpdb

  This script gets 3D structures by taking UniProt ID(s) as input, figures out the currently available PDB structures that are experimentally validated, and chooses the best structure based on lowest resolution (A value). Then it extracts PDB ID(s) that should be retrieved and stores it in a CSV file.

  Language:Python101

• drorlab/DIPS

  Database of Interacting Protein Structures (DIPS)

  Language:Python9514

• hughplay/dockerlab

  :alien: Build a docker container as your workspace.

  Language:Dockerfile4