Pinned Repositories
2018_scWorkshop
2019-snakemake-ucdavis
Intro to workflows for efficient automated data analysis, using snakemake.
361Division
361 Division - Scientific Training, Education and Learning
abacat
🥑 A Bacterial genome Comparison and Annotation Toolkit
ads1-hw-examples
How some homework solutions should work on some small examples
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
arriba
Fast and accurate gene fusion detection from RNA-Seq data
ASAP
Program for the analysis and visualization of whole-slide images in digital pathology
Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
Augustus
Genome annotation with AUGUSTUS
mym88mym's Repositories
mym88mym/Augustus
Genome annotation with AUGUSTUS
mym88mym/BIND_annotation
Scripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)
mym88mym/biocode
Bioinformatics code libraries and scripts
mym88mym/Bioinformatics-BC
New to Bioinformatics? Start Here!
mym88mym/bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
mym88mym/BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
mym88mym/CharGer
Characterization of Germline variants
mym88mym/cheatsheets
Official Matplotlib cheat sheets
mym88mym/common_analyses
Repository of common bioinformatics scripts
mym88mym/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
mym88mym/genomics-research
mym88mym/genomics-workshop
Genomics Workshop Overview
mym88mym/learn-python
learn how to program in python from the very basics like variables, loops and functions to some advanced materials such as functional programming and list comprehension
mym88mym/metagenomics_tutorial
Analyzing shotgun data
mym88mym/MetaModels
Scripts to analyse metagenome-wide metabolic models
mym88mym/metaphor
Metaphor: Metagenomics Pipeline for Short Reads
mym88mym/numpy-100
100 numpy exercises (with solutions)
mym88mym/pathongs
Pathogen NGS Documentary
mym88mym/primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
mym88mym/Python-100-Days
Python - 100天从新手到大师
mym88mym/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
mym88mym/SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
mym88mym/scCustomize
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
mym88mym/Target-panel-based-CNV-detection
Detection of CNVs (deletion/duplication) in target panel based NGS data
mym88mym/TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
mym88mym/ThreeDRNAseq
A shiny App for differential expression and differential alternative splicing analysis
mym88mym/tinycov
standalone command line utility written in python to plot coverage from a BAM file
mym88mym/TMLflow
Snakemake pipeline for SNV and CNV analysis using IonTorrent data
mym88mym/TS-1
Torrent Suite
mym88mym/XGBLC