This extension add NGS analysis tools for Dockerfiles in the bgruening/docker-galaxy-stable images from Björn A. Grüning.
https://github.com/bgruening/docker-galaxy-stable
base image
https://github.com/myoshimura080822/galaxy_in_docker_custom
- myoshimura080822/galaxy_in_docker_bitwf:160607
- modified wrong path of sailfish-0.9.2 wrapper tool
- myoshimura080822/galaxy_in_docker_bitwf:160520
- add new workflow for wig convert to bigwig format
- genome_RNA-seq_BAM_to_BigWig.ga
- add new workflow for wig convert to bigwig format
- myoshimura080822/galaxy_in_docker_bitwf:0512
- modefied galaxy.conf docker setting
- from "usr/bin/docker -d" to "usr/bin/docker -d -s vfs"
- modefied galaxy.conf docker setting
- myoshimura080822/galaxy_in_docker_bitwf:160411
- add Human UCSC hg38 for genome-reference
- add genome-mapped RNA-seq Workflow
- genome_RNA-seq_01_Paired-end(mapping_in_HISAT2).ga
- genome_RNA-seq_01_Paired-end(mapping_in_Tophat2).ga
- genome_RNA-seq_01_Single-end(mapping_in_HISAT2).ga
- genome_RNA-seq_01_Single-end(mapping_in_Tophat2).ga
- myoshimura080822/galaxy_in_docker_bitwf:160408
- add index path(.lov file) for tophat and hisat2