/galaxy_in_docker_custom_bit_wf

galaxy-mytools_ToolFactory

Primary LanguagePythonMIT LicenseMIT

galaxy_in_docker_custom_bit_wf

This extension add NGS analysis tools for Dockerfiles in the bgruening/docker-galaxy-stable images from Björn A. Grüning.

https://github.com/bgruening/docker-galaxy-stable

base image

https://github.com/myoshimura080822/galaxy_in_docker_custom

History(Tag)

  • myoshimura080822/galaxy_in_docker_bitwf:160607
    • modified wrong path of sailfish-0.9.2 wrapper tool
  • myoshimura080822/galaxy_in_docker_bitwf:160520
    • add new workflow for wig convert to bigwig format
      • genome_RNA-seq_BAM_to_BigWig.ga
  • myoshimura080822/galaxy_in_docker_bitwf:0512
    • modefied galaxy.conf docker setting
      • from "usr/bin/docker -d" to "usr/bin/docker -d -s vfs"
  • myoshimura080822/galaxy_in_docker_bitwf:160411
    • add Human UCSC hg38 for genome-reference
    • add genome-mapped RNA-seq Workflow
      • genome_RNA-seq_01_Paired-end(mapping_in_HISAT2).ga
      • genome_RNA-seq_01_Paired-end(mapping_in_Tophat2).ga
      • genome_RNA-seq_01_Single-end(mapping_in_HISAT2).ga
      • genome_RNA-seq_01_Single-end(mapping_in_Tophat2).ga
  • myoshimura080822/galaxy_in_docker_bitwf:160408
    • add index path(.lov file) for tophat and hisat2