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Setup Ubuntu14.04 ENV for Galaxy
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Install below
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Tool required R packages
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Tool required Python packages (system python)
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samtools-0.1.19
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Sailfish-0.6.3
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Setting Galaxy (when galaxy_username argument)
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create Galaxy tool dependency_dir
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setting tool_dependency_dir and master_api_key
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Use
$sh setup_rnaseqENV.sh <galaxy_username>
Copyright (c) 2015 Mika Yoshimura and RIKEN Bioinformatics Research Unit Released under the MIT license (http://www.opensource.org/licenses/mit-license.php)