Pinned Repositories
bgen_parser
Yet another Python module for reading BGEN files
demo
I plan to put here all kinds of demos.
fabric
FABRIC (Functional Alteration Bias Recovery In Coding-regions) is a framework for detecting genes showing functional alteration bias.
firm
FIRM (Functional Impact Rating at the Molecular-level) is a machine-learning model for predicting the functional impact of genetic variants.
firm_processed_files
Processed files (i.e. precalculated effect scores) for the FIRM project.
geneffect
A Python library for retrieving functional annotations of genes and analyzing the effects of genetic variants, currently focusing on proteomic data of protein-coding genes.
keras-seq-vec-transformer
BERT-like transformer and auto-encoder models implemented in pure Keras
protein_bert
pwas
Proteome-Wide Association Study
ukbb_parser
A Python module for loading phenotypic and genetic data from the UK Biobank.
nadavbra's Repositories
nadavbra/protein_bert
nadavbra/pwas
Proteome-Wide Association Study
nadavbra/ukbb_parser
A Python module for loading phenotypic and genetic data from the UK Biobank.
nadavbra/geneffect
A Python library for retrieving functional annotations of genes and analyzing the effects of genetic variants, currently focusing on proteomic data of protein-coding genes.
nadavbra/firm
FIRM (Functional Impact Rating at the Molecular-level) is a machine-learning model for predicting the functional impact of genetic variants.
nadavbra/keras-seq-vec-transformer
BERT-like transformer and auto-encoder models implemented in pure Keras
nadavbra/bgen_parser
Yet another Python module for reading BGEN files
nadavbra/demo
I plan to put here all kinds of demos.
nadavbra/fabric
FABRIC (Functional Alteration Bias Recovery In Coding-regions) is a framework for detecting genes showing functional alteration bias.
nadavbra/firm_processed_files
Processed files (i.e. precalculated effect scores) for the FIRM project.
nadavbra/proteinbert_data_files
Large data files for the ProteinBERT project.
nadavbra/shared_utils
Shared Python utils used by a number of projects.