Pinned Repositories
Benchmarking_Hi-C_scaffolders
Support scripts for the JOBIM poster "Benchmarking Hi-C scaffolders".
EMBO-24-genome-sequencing
full_thesis
Complete PhD thesis "Improving genome assemblies of non-model non-vertebrate animals with long reads and Hi-C"
genome_assembly_tools
List of genome assembly tools
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
GraphUnzip
Unzip assembly graphs with Hi-C data and/or long reads.
HapPy
Haploidy and Size Completeness Estimation
overcoming_uncollapsed_haplotypes_in_long_read_assemblies
Supporting scripts for the paper "Overcoming uncollapsed haplotypes in long read assemblies"
Phased
phasing_or_purging
Supporting command lines for the article "Phasing or purging: tackling the genome assembly of a highly heterozygous animal species in the era of high-accuracy long reads"
nadegeguiglielmoni's Repositories
nadegeguiglielmoni/genome_assembly_tools
List of genome assembly tools
nadegeguiglielmoni/GraphUnzip
Unzip assembly graphs with Hi-C data and/or long reads.
nadegeguiglielmoni/Benchmarking_Hi-C_scaffolders
Support scripts for the JOBIM poster "Benchmarking Hi-C scaffolders".
nadegeguiglielmoni/EMBO-24-genome-sequencing
nadegeguiglielmoni/HapPy
Haploidy and Size Completeness Estimation
nadegeguiglielmoni/overcoming_uncollapsed_haplotypes_in_long_read_assemblies
Supporting scripts for the paper "Overcoming uncollapsed haplotypes in long read assemblies"
nadegeguiglielmoni/full_thesis
Complete PhD thesis "Improving genome assemblies of non-model non-vertebrate animals with long reads and Hi-C"
nadegeguiglielmoni/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
nadegeguiglielmoni/Phased
nadegeguiglielmoni/phasing_or_purging
Supporting command lines for the article "Phasing or purging: tackling the genome assembly of a highly heterozygous animal species in the era of high-accuracy long reads"
nadegeguiglielmoni/presentations
nadegeguiglielmoni/SALSA
Moving SALSA to Python3, not working yet
nadegeguiglielmoni/stuff_for_mcl
nadegeguiglielmoni/tinycov
standalone command line utility written in python to plot coverage from a BAM file
nadegeguiglielmoni/ULB_BMOL-F-413_students