nahmedraja/GASAL2

Error on run on given test data

leannmlindsey opened this issue · 2 comments

leannmlindsey commented

Hello. I just installed GASAL2 on the CHPC system at University of Utah. I followed your instructions and then ran the test_prog.out on the given test data and had this error:

[GASAL CUDA ERROR] invalid argument(CUDA error no.=1). Line no. 171 in file src/res.cpp

I used this to run:

./test_prog.out -a 3 -b 3 -q 6 -r 1 -s -t -p -y "local" query_batch.fasta target_batch.fasta

I have the following modules installed:
gcc/10.2.0
cuda/11.4

and I installed with these variables:
./configure.sh /uufs/chpc.utah.edu/sys/installdir/cuda/11.4.0/
make GPU_SM_ARCH='sm_70' MAX_QUERY_LEN=300 N_CODE='0x4E' N_PENALTY=-1

and the output from nvidia-smi is
Thu May 19 10:12:43 2022
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 470.57.02 Driver Version: 470.57.02 CUDA Version: 11.4 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
| | | MIG M. |
|===============================+======================+======================|
| 0 Tesla V100-PCIE... On | 00000000:3B:00.0 Off | Off |
| N/A 33C P0 25W / 250W | 0MiB / 16160MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+

+-----------------------------------------------------------------------------+
| Processes: |
| GPU GI CI PID Type Process name GPU Memory |
| ID ID Usage |
|=============================================================================|
| No running processes found |

leannmlindsey commented

It does seems to print all of the output and then errors after the last printed line which is:

query_name=20000 target_name=20000 score=261 query_batch_start=-1 target_batch_start=69 query_batch_end=151 target_batch_end=213 CIGAR=1I4M1X1M1X2M1X6M1X4M2X2M1X11M1X1M1I10M1X4M2X5M2I6M2D1M1X23M1X3M1X9M1X9M1X2M4I1M1X1M2I1X2M1X7M1X8M
[GASAL CUDA ERROR:] invalid argument(CUDA error no.=1). Line no. 171 in file src/res.cpp

wangyaning45 commented

Have you solved this problem? I also encountered this problem