nanoporegenomics/napu_wf

Multiple input bams

Closed this issue · 3 comments

wharvey31 commented

Hello,

I was wondering if you had a procedure to integrate multiple input bams? Do I add them as a list of strings to the json file or is there currently not functionality for this?

Thanks so much for your efforts to this point!

mikolmogorov commented

Hi @wharvey31

Sorry for the late response! Currently the pipeline only accepts a single bam. A workaround would be to merge all input bams into a single file. We are planning to add the support of multiple bams in the upcoming updates!

Misha

mikolmogorov commented

I think @meredith705 have added support for multiple bams input, has it been merged with the main r9/r10 branches?

meredith705 commented

Hi @wharvey31,

This enhancement is now available in the R9_muliple_inputs and R10_multiple_inputs branches.

These will be merged into just R9 and R10 branches very soon.

Thank you for your comment!
Melissa M