mikolmogorov
Tenure-track Investigator at NCI. I work on building algorithms for computational genomics.
National Cancer InstituteBethesda
Pinned Repositories
hapdiff
SV calling for diploid assemblies
hapdup
Pipeline to convert a haploid assembly into diploid
card_workflows
WDL workflows for the NIH CARD long-read sequencing project
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
ig-corrector
A tool for immunoglobulines NGS data processing
jax-meta-tutorial
Metagenome assembly tutorial, JAX long-read sequencing workshop 2022
maf2synteny
A tool for recovering synteny blocks from multiple alignment
Nano-Align
Angorithms for protein identification using a sub-nanopore
pbclip
A simple tool to fix PacBio fasta/q that was not properly split into subreads
Ragout
Chromosome-level scaffolding using multiple references
mikolmogorov's Repositories
mikolmogorov/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
mikolmogorov/Ragout
Chromosome-level scaffolding using multiple references
mikolmogorov/maf2synteny
A tool for recovering synteny blocks from multiple alignment
mikolmogorov/pbclip
A simple tool to fix PacBio fasta/q that was not properly split into subreads
mikolmogorov/jax-meta-tutorial
Metagenome assembly tutorial, JAX long-read sequencing workshop 2022
mikolmogorov/Nano-Align
Angorithms for protein identification using a sub-nanopore
mikolmogorov/card_workflows
WDL workflows for the NIH CARD long-read sequencing project
mikolmogorov/ig-corrector
A tool for immunoglobulines NGS data processing
mikolmogorov/trapezoid_map
Useless implementation of trapezoidal map search structure
mikolmogorov/debrujin
Useless debrujin graph implementation
mikolmogorov/athena_meta
read cloud assembler
mikolmogorov/bioconda-recipes
Conda recipes for the bioconda channel.
mikolmogorov/CSE221
mikolmogorov/CSE280a
Term project for CSE280a: Population size estimation
mikolmogorov/CSE283
Project for CSE283
mikolmogorov/cv
mikolmogorov/datasets
Some supplementary dataset for other repostories
mikolmogorov/idba
mikolmogorov/kolmogorov-lab
Kolmogorov lab website
mikolmogorov/margin
mikolmogorov/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
mikolmogorov/SpectroGene
A tool for genome annotation using top-down mass spectrometry.
mikolmogorov/svim-asm
Structural Variant Identification Method using Genome Assemblies
mikolmogorov/whatshap
Read-based phasing of genomic variants, also called haplotype assembly