mikolmogorov/Flye

Issues

• Q: input settings for HERRO-corrected ONT reads

  #738 opened 2 months ago by aistBMRG
  0

• OSError: AF_UNIX path too long

  #727 opened 2 months ago by buchanri
  4

• Core dump with Python 3.9

  #722 opened 2 months ago by tnn111
  3

• HiFi and high quality ultra-long ONT

  #733 opened 2 months ago by JohnUrban
  7

• Feature Request: Allow longer minimum overlaps than 10kb.

  #736 opened 2 months ago by JohnUrban
  3

• question: min coverage trimming?

  #726 opened 2 months ago by kevfengler227
  4

• MetaFlye Latest version

  #737 opened 2 months ago by Ashok-pappu
  1

• Could i use GFAse to phase the GFA from FLye

  #734 opened 2 months ago by YouxinZhao
  1

• Cannot make Flye

  #735 opened 2 months ago by Ciznetwork
  1

• assembly_info.txt for edge not for contig?

  #732 opened 2 months ago by goshng
  2

• Flye running for over five days on a 3GB genome.

  #729 opened 2 months ago by afiyachida
  5

• Inferring number of elements in an assembly based on multiplicity

  #694 opened 7 months ago by AceM1188
  4

• How to adjust parameters

  #728 opened 3 months ago by hanxintong5887
  1

• Pipeline aborting because flye-samtools and flye-minimap2 not found

  #725 opened 3 months ago by gwaldbieser
  3

• ERROR: Can't identify input file type

  #719 opened 3 months ago by DaRinker
  7

• --polish-target has reduced N50 and largest contig

  #723 opened 3 months ago by lilypeck
  2

• Core dump

  #721 opened 4 months ago by tnn111
  2

• Flye does not continue into consensus stage

  #720 opened 4 months ago by Niels1804
  1

• Nanopore Long Read Assembly: Stuck on Polishing Stage, No Eukaryotic Organism Represented

  #718 opened 4 months ago by Tpowell7
  1

• assembly graph with several collapse contigs

  #716 opened 4 months ago by pguenzi-tiberi
  2

• Conda installation

  #712 opened 4 months ago by Narmatha99
  2

• Missing & misassembled plasmids

  #706 opened 4 months ago by peradastra
  1

• Correcting bubbles step crash

  #702 opened 4 months ago by mprous1
  11

• problem in opening GFA

  #717 opened 4 months ago by lfaino
  1

• fastq format error

  #715 opened 5 months ago by yamkela-mg
  1

• thread exception - system ran out of memory

  #710 opened 5 months ago by samuelmontgomery
  4

• A couple of installation issues.

  #703 opened 6 months ago by l-yampolsky
  4

• Merge dip_polish branch to mainstream

  #695 opened 8 months ago by mp15
  3

• installation error flye.six.moves

  #714 opened 6 months ago by anke-king
  1

• Flye 2.9.4 fails if running inside WDL due to long Cromwell path

  #713 opened 6 months ago by asteindorff
  2

• Suggestions on using --keep haplotypes

  #709 opened 6 months ago by riyasj327
  2

• Should I filter based on quality ONT 10.4.1 simplex reads before using --nano-hq?

  #705 opened 6 months ago by SonjaKersten
  1

• No disjointigs were assembled - please check if the read type and genome size parameters are correct

  #708 opened 6 months ago by lqhungpt
  1

• Stuck in repeat stage for low coverage sample

  #707 opened 6 months ago by JWDebler
  4

• Flye reported an error

  #700 opened 6 months ago by HHHHerbs
  4

• assembly error No disjointigs were assembled

  #704 opened 7 months ago by isabelluo
  1

• minimap2 and samtools issues in running consensus stage

  #698 opened 7 months ago by Jerry-is-a-mouse
  1

• Assembly of complex genomes with high rate of genome rearrangements

  #686 opened 7 months ago by Alteroldis
  2

• Is the assamble.fasta is redundant without "keep-haplotypes"

  #701 opened 7 months ago by YouxinZhao
  1

• Samtools Library Issues

  #699 opened 8 months ago by schmigle
  1

• free(): invalid next size (fast) at "Simplifying the graph"

  #684 opened 8 months ago by grinning-bat
  4

• The question after #683

  #697 opened 8 months ago by Jerry-is-a-mouse
  1

• Meanings of both '--keep-halotypes' and '--no-alt-contigs'.

  #683 opened 8 months ago by Jerry-is-a-mouse
  7

• Anomaly in resource usage

  #687 opened 8 months ago by VendelboNM
  7

• Can't resume from a definite polishing step ?

  #689 opened 8 months ago by ImagoXV
  4

• Flye assembler should support spaces in file paths.

  #693 opened 8 months ago by sarahjeeeze
  1

• I am running an assembly on an ONT reads, but it was aborted

  #692 opened 8 months ago by Wanjofu
  1

• flye usage

  #690 opened 8 months ago by emilydolivo97
  1

• What parameter for R10.4.1 FAST mode data

  #688 opened 9 months ago by LogCrab
  1

• corrupted double-linked list

  #682 opened 9 months ago by grinning-bat
  3