mikolmogorov/Flye

The question after #683

Jerry-is-a-mouse opened this issue · 1 comments

Jerry-is-a-mouse commented

So sorry for my late reply. If I want to get primary contigs, should I set "--keep-haplotypes" option and "--no-alt-contigs" both; or just set the "--no-alt-contigs" option? You mentioned that “--no-alt-contigs” is used in default mode which may be different from haplotype mode using “--keep-haplotypes” option in my opinion.