command works on 0.7.0 but error in 0.8.0
abcdtree opened this issue · 1 comments
abcdtree commented
Hi,
Issue Report
The same command below works well in 0.7.0, but will return error in 0.8.0
dorado basecaller ${model_home}/dna_r10.4.1_e8.2_400bps_sup@v5.0.0 ${data_home}/pod5 --estimate-poly-a --kit-name SQK-PCB114-24 > my.bam
##error message
terminate called after throwing an instance of 'std::invalid_argument'
what(): Trim interval 118-93 is invalid for sequence TGTTATTGTACTGTACTTGGTTCAGTTATTTTGTGTATGCAAACGATATTAGAGGAAGAGTGAGCACCGTGACAACTAGGCACAGCGAGTCTCGTTTTCTGCTTGGTGCTGGATCTGCTGAACTC
/var/spool/slurm/job66442714/slurm_script: line 30: 114723 Aborte
Run environment:
- Dorado version: 0.8.0
- Dorado command: dorado basecaller ${model_home}/dna_r10.4.1_e8.2_400bps_sup@v5.0.0 ${data_home}/pod5 --estimate-poly-a --kit-name SQK-PCB114-24 > my.bam
my purpose is to test the difference on polyA tail estimation from version 0.7.0 and 0.8.0, anything I need to change for 0.8.0?
Thanks
Josh
malton-ont commented
This appears to be the same as #1020, please follow that issue for updates.