nanoporetech/dorado

SUP Modification Basecalling Model Architecture

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Hi! From what I understand, Remora is integrated with Dorado, and the latest SUP canonical basecalling models now use Transformer-based architectures. I was curious if the SUP models for modification basecalling are also Transformer-based or if they still rely on CNNs and LSTMs?

Hi @harikaurel,

The modification models are currently CNN+LSTM.