nanoporetech/rerio

unexpected model download behaviour (5mC_all_context_sup_r1041_e82)

QGouil opened this issue · 1 comments

Hi Marcus,

just a small issue.
python3 download_model.py remora_models/5mC_all_context_sup_r1041_e82

only downloads a text file, "5mC_all_context_sup_r1041_e82", that contains the link to the tgz archive. But wget and tar xzf on this are a workaround.
Cheers,

Quentin

Hi Quentin,
You need to add the --remora flag to download remora models; i.e.
python3 download_model.py --remora remora_models/5mC_all_context_sup_r1041_e82

The text file that is part of the rerio repo that tells the download script the url from which to get the model.
Best,
Filipe