nanoporetech/rerio

Issues

• No FASTQ File Generated After Successful Guppy Basecalling

  #66 opened 4 months ago by Echo-0301
  1

• Best Practice for BrdU and m6A base calling

  #67 opened 4 months ago by KunFang93
  0

• Regarding m6A modified Basecalling

  #62 opened 6 months ago by PRIYANKA-22091995
  1

• [ERROR] Model path not found

  #65 opened 6 months ago by Wshengquan
  2

• Urgent Help Required: Regarding Error for modified basecalling

  #58 opened 7 months ago by PRIYANKA-22091995
  1

• mitochondrial dna and models?

  #23 opened 7 months ago by tonperre
  2

• recommend parameter for 6ma

  #37 opened 7 months ago by BaylorLyu
  1

• Downloading models fails with "[Errno 61] Connection refused"

  #39 opened 7 months ago by ppapasaikas
  1

• Segmentation fault

  #60 opened 7 months ago by angelluigi
  1

• remora model 5mC all context 1041 E82 support for 260bp?

  #54 opened 7 months ago by BjoernUsadel
  1

• Local Dorado models are not being recognised

  #63 opened 7 months ago by ekg123
  1

• Compatibilities Clair3 / Dorado model

  #64 opened 7 months ago by Lipinski-B
  1

• 4mC_5mC dorado model with 5khz data

  #61 opened 8 months ago by samuelmontgomery
  3

• Risks involved when running a model tested on dorado v0.4.3 on v.0.5.3?

  #59 opened 10 months ago by Ge0rges
  1

• v4.3.0 models and bacterial methylation model

  #57 opened a year ago by mbhall88
  1

• dorado_models compatibility

  #56 opened a year ago by hamid89
  0

• clair3 fast model

  #55 opened a year ago by mbhall88
  1

• Clair3 Model Compatibility

  #51 opened a year ago by keremozdel
  5

• Remora models

  #48 opened a year ago by CWYuan08
  1

• Running 5mc_all_context remora model on Megalodon

  #43 opened a year ago by jcolicchio-soundag
  1

• 5mC_all_context_sup_r1041_e82 will there be a version for pore r9.4.1 for DNA methylation inference in all contexts?

  #46 opened a year ago by AlineMuyle
  1

• Different Coverage and % of methylated reads for same site in different models

  #24 opened a year ago by dipannita-g
  1

• unexpected model download behaviour (5mC_all_context_sup_r1041_e82)

  #42 opened a year ago by QGouil
  1

• Bonito research model, dramatic increase in basecall quality scores

  #18 opened a year ago by callumparr
  4

• CUDA out of memory error with res_dna_r9.4.1_e8.1_sup_v033.cfg

  #35 opened a year ago by alvinwt
  0

• crf model with a CPU device

  #19 opened a year ago by lbal-biomat
  5

• request clair3 model for r941_e8_hac_g507

  #33 opened a year ago by nextgenusfs
  2

• Guppy_Basecaller 5.0.11 - GlobalNormTransducer layer has non-zero stay state weight! - Error

  #29 opened a year ago by ziejan
  3

• CRF models for promethION

  #27 opened a year ago by billytcl
  1

• Methylation (5mC & 6mA) call for MinION R10.3 reads

  #20 opened a year ago by yfuruta
  3

• Clair3 v420 on v4.3.0

  #53 opened a year ago by pustoshilov-d
  1

• bacterial methylation model

  #52 opened a year ago by asershova
  2

• Dorado models downloading script not working

  #50 opened a year ago by AlexanRNA
  2

• rerio modbases-all-contexts model for R10.4.1

  #47 opened 2 years ago by Kevin-Brockers
  4

• Clair3 models for v4.1.0 dorado basecaller models

  #49 opened 2 years ago by AlexanRNA
  0

• Issue running guppy_basecaller executable

  #45 opened 2 years ago by tingchenlrx
  1

• fastq output format errors with guppy 4.4.1

  #17 opened 4 years ago by RichardCorbett
  22

• Query on base modification

  #22 opened 3 years ago by aswathishiju
  1

• bonito models not working with `--barcode_kits`

  #26 opened 3 years ago by xlin-1
  2

• Are 5mC and 5hmC distinguished in res_dna_r941_min_modbases_5mC_5hmC_v001.cfg?

  #28 opened 3 years ago by Shians
  2

• res_dna_r941_min_modbases_5mC_5hmC_v001.cfg

  #31 opened 3 years ago by jennyg86
  2

• direct RNA basecalling, which is the latest model?

  #36 opened 3 years ago by ruicatxiao
  1

• miscalled CpG at repeat sequence

  #38 opened 3 years ago by TerrenceT-79
  1

• Error when downloading clair3 models via rerio "(not a gzip file)"

  #41 opened 3 years ago by IraDeveson
  2

• Error when downloading clair3 models via rerio

  #40 opened 3 years ago by IraDeveson
  0

• bonito models vs. guppy 4.5.2+

  #25 opened 4 years ago by Sumsarium
  8

• Error initialising basecall server

  #32 opened 3 years ago by dipannita-g
  5

• Rerio training model materials

  #30 opened 3 years ago by PanZiwei
  2

• Could I use config file for MinION/GridION to deal with fast5 produced by PromethION?

  #34 opened 3 years ago by mantonglaw
  0

• Timetable for a new release?

  #21 opened 4 years ago by kalylian
  2