nanoporetech/tombo

overplot-type doesn't work

uribertocchi opened this issue · 1 comments

Hi all.
I'm trying to produce a plot with density curves for a sample and control.
When using the following command, the output is the default raw reads plot. Any idea what am I missing here?

The command:
tombo plot genome_locations --genome-locations "${CHR}:${START}" "${CHR}:${END}"
--fast5-basedirs $FAST5_DIR
--control-fast5-basedirs $CONTROL_DIR
--plot-standard-model
--pdf-filename "${PLOT_DIR}/${CHR}${START}${END}.pdf"
--overplot-type Density

Tombo is no longer supported. I would recommend moving to Remora for these types of plots.