nanoporetech/tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
PythonNOASSERTION
Issues
- 1
Cannot annotate fast5
#457 opened by JSluo888 - 0
Which strand to use in RNA modification?
#456 opened by guangzhaocs - 3
Support RNA004 kit in Tombo
#455 opened by charlesxu90 - 2
- 2
Can't install Tombo under current Ubuntu installation
#449 opened by jsthv - 3
Tombo installation issue with bioconda
#430 opened by szakallasn3 - 1
Fail to Install tombo using venv3 Ubuntu18.04
#452 opened by abadouh - 1
Cannot install on Mac OS
#451 opened by edimmick - 1
overplot-type doesn't work
#450 opened by uribertocchi - 1
Problem importing Tombo in python
#453 opened by MarioRinBarr - 2
tombo resquiggle 0%|
#417 opened by Li-Rui091 - 4
Resquiggle Process stuck at 0
#440 opened by AzlanNI - 2
- 3
Slow Re-squiggle though set --process 40 to run tombo resquiggle over multiple cores
#441 opened by jouhpf - 4
Tombo preprocess error
#444 opened by keenhl - 2
issue when running re-squiggle
#448 opened by tweedle828 - 2
Will this affect my next analysis
#445 opened by lanyunxin - 1
Endless running Tombo resuiggle, reached to 100% in resuiggle but doesn't finish the job
#447 opened by kwonej0617 - 4
Unsuccessful resquiggle for RNA
#443 opened by vgori - 4
ERROR: 'utf-8' codec can't decode byte 0x8b
#424 opened by sagnikbanerjee15 - 2
preprocessing for tombo
#429 opened by priyanagpal25 - 2
preprocessing for tombo
#433 opened by meneki - 4
Unable to install ont-tombo via condo and pip
#439 opened by skranz0 - 0
- 2
call methylation site
#432 opened by duhuipeng - 1
- 1
Model sample compare with different lengths of DNA
#436 opened by SanityTree - 1
- 1
Endless running Tombo resuiggle, reached to 100% in resuiggle but doesn't go to next step, generate output files
#437 opened by kwonej0617 - 3
- 16
tombo preprocess annotate_raw_with_fastqs
#422 opened by AzlanNI - 1
- 1
tombo installing error by pip
#434 opened by gaoxiangcao - 1
too slow in step tombo resquiggle:Getting file list with more than 9000kb reads
#427 opened by 7kylin - 0
How is expected fraction abundance calculated? Does it normalize for coverage in treated vs untreated conditions?
#428 opened by smk5g5 - 1
- 0
Is there a minimum sequence length/ can resquiggle work with a 38 nt reference?
#426 opened by zaettu - 1
- 1
Trimming raw signal based on genomic location
#419 opened by onkar2470 - 0
de novo & meme
#421 opened by sarah872 - 7
No basecalls found during resquiggle on RNA fast5s
#412 opened by pterzian - 2
- 2
Error with tombo preprocess
#410 opened by chayanroy - 0
Preprocess annotate_raw_with_fastqs halting issue
#418 opened by SwiftSeal - 0
Error while reading Statistic File
#415 opened by AzlanNI - 0
- 1
Different output in wig file in every running
#413 opened by kwonej0617 - 0
How can I get this folder "test_data" ? I want to run tombo/tombo/tests/shell_tests.sh.
#411 opened by jianzheng-china - 0
Raising an error and exit with the tombo_helper function should return non-zero value
#408 opened by patbohn - 0