JSluo888

Penn class of 2025. Math, CS, Comp Bio.

UPenn

Pinned Repositories

RedNano
Language:Python3 2 31
m6anet
Detection of m6A from direct RNA-Seq data
Language:Python110 7 11619
CHIEF
Clinical Histopathology Imaging Evaluation Foundation Model
Language:Python503 9 3375
autoqtl
Automated Quantitative Trait Locus Analysis (AutoQTL)
Language:Python0 0 00
Interpretability
Language:Jupyter Notebook1 1 00
UNI
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Language:Jupyter Notebook369 7 4553
dorado
Oxford Nanopore's Basecaller
Language:C++560 31 1.2k68
remora
Methylation/modified base calling separated from basecalling.
Language:Python162 20 19721
tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Language:Python233 37 44954
prov-gigapath
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
Language:Python448 6 11262

JSluo888's Repositories

JSluo888/Interpretability
Language:Jupyter Notebook1 1 00
JSluo888/autoqtl
Automated Quantitative Trait Locus Analysis (AutoQTL)
Language:Python0 0 00