JSluo888

JSluo888's Stars

• allenai/scispacy

  A full spaCy pipeline and models for scientific/biomedical documents.

  Language:Python1.7k52322228

• zhoubolei/bolei_awesome_posters

  CVPR and NeurIPS poster examples and templates. May we have in-person poster session soon!

  1.5k100143

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++78038839164

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++560311.2k68

• mahmoodlab/HIPT

  Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

  Language:Jupyter Notebook521117091

• hms-dbmi/CHIEF

  Clinical Histopathology Imaging Evaluation Foundation Model

  Language:Python50393375

• prov-gigapath/prov-gigapath

  Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

  Language:Python448611262

• gpertea/stringtie

  Transcript assembly and quantification for RNA-Seq

  Language:C++3942844078

• mahmoodlab/CONCH

  A vision-language foundation model for computational pathology - Nature Medicine

  Language:Python29332123

• GoekeLab/awesome-nanopore

  A curated list of awesome nanopore analysis tools.

  24418246

• nanoporetech/remora

  Methylation/modified base calling separated from basecalling.

  Language:Python1622019721

• Kyushik/Predictive-Uncertainty-Estimation-using-Deep-Ensemble

  This repository is the code for Predictive Uncertainty Estimation using Deep Ensemble

  Language:Jupyter Notebook1528231

• hasindu2008/f5c

  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

  Language:C148710726

• daviddaiweizhang/istar

  Language:Python10813116

• fedshyvana/pathology_mllm_training

  Language:Python821413

• epi2me-labs/wf-transcriptomes

  Language:Nextflow78812134

• HistAI/hibou

  Hibou: Foundational Models for Pathology

  Language:Python59257

• zhengli09/BASS

  Bayesian Analytics for Spatial Segmentation

  Language:C++21177

• haotianteng/Xron

  Xron - an omni basecaller for ONT reads.

  Language:Python204113

• yulab2021/TandemMod

  Language:Jupyter Notebook15272

• Katalip/ca-stinv-cnn

  Code for "Improving Stain Invariance of CNNs for Segmentation by Fusing Channel Attention and Domain-Adversarial Training"

  Language:Python10300

• EpistasisLab/autoqtl

  Automated Quantitative Trait Locus Analysis (AutoQTL)

  Language:Python8203

• y9c/m6A-SACseq

  🧪 Optimized protocol for m6A-SAC-seq

  Language:Python8102

• intelc/pathatpenncal

  Language:JavaScript6110

• Derryxu/RedNano

  Language:Python3231

• wagnchogn/RandStainNA-plusplus

  Language:Python2110

• JSluo888/Interpretability

  Language:Jupyter Notebook1100

• stevensusas/SciSketch

  Language:Jupyter Notebook110