mahmoodlab/HIPT

Issues

• Feature Extraction

  #75 opened 4 months ago by 18570481142
  0

• Will the code for MCAT be updated in the survival prediction section?

  #73 opened 8 months ago by rabberk
  2

• Pretrained 3. ViT?

  #74 opened 8 months ago by vildesboe
  0

• The tcga_brca_subset.csv.zip compressed file is corrupted.

  #72 opened 9 months ago by s-xisx
  2

• what is the mean and std when using the pretrined dino vit-s to extract patch feature?

  #70 opened 9 months ago by weiaicunzai
  1

• Inquiry about Dataset

  #26 opened 2 years ago by bryanwong17
  4

• dropout augmentation for second dino

  #71 opened 9 months ago by jafarinia
  0

• Worse Performance in CAMELYON16 only

  #41 opened 2 years ago by bryanwong17
  5

• Poor performance on PRAD downstream

  #69 opened a year ago by mbu93
  0

• Duration of Feature Extraction Using hipt4k Pretrained Model

  #66 opened a year ago by XinyangHan
  4

• Gradient accumulation not properly implemented

  #53 opened a year ago by clemsgrs
  2

• Hurry!!!How to slove this problem?

  #57 opened a year ago by wxyz-wjx
  2

• The results of each inference are inconsistent

  #59 opened a year ago by yuzhuogu
  2

• Setting patient_strat=FALSE in subtyping

  #61 opened a year ago by HanwenXuTHU
  3

• How to determine the survival score when a patient has multiple WSIs?

  #64 opened a year ago by allgebra
  1

• 4k attention visualization output kind of weird

  #65 opened a year ago by yubin-ai
  1

• Visualization Disturbing Original H&E

  #68 opened a year ago by matthew-lee1
  0

• Batch-wise extract features

  #44 opened a year ago by SongDoHou
  3

• Some issue about create patch.

  #51 opened a year ago by icherishxixi
  14

• Pretraining Dataset

  #67 opened a year ago by aCoalBall
  0

• dino4k pretraining

  #60 opened a year ago by Akihiko0123
  4

• Got different results when runing the example "Using the HIPT_4K API" two times

  #56 opened a year ago by weitinging
  7

• Data preprocessing

  #63 opened a year ago by WinterPan2017
  0

• coordinates of 4k region embeddings

  #62 opened a year ago by florianbuettner
  0

• Getting raw patches after CLAM preprocessing

  #28 opened 2 years ago by bryanwong17
  5

• a WSI image with a higher resolution

  #58 opened a year ago by yuzhuogu
  0

• .csv metadata file for colorectal dataset

  #55 opened a year ago by umarikkar
  0

• knn_classifier

  #54 opened a year ago by xjc6666
  0

• Creating patches and extracting features for [4096 x 4096]

  #49 opened 2 years ago by nam1410
  3

• WSI preprocessing

  #43 opened 2 years ago by Irina-Zhang
  5

• Issue with Attention Visualization

  #29 opened 2 years ago by Arkkienkeli
  2

• Using the Features in CLAM

  #46 opened a year ago by shubhaminnani
  2

• name 'get_patch_attention_scores' is not defined

  #47 opened a year ago by Lewislou
  1

• the reasoning behind attention heatmaps code

  #48 opened a year ago by clemsgrs
  1

• VIT-4096-WSI

  #50 opened a year ago by arjun11verma
  1

• Extracting features from 4096 x 4096 patches (M x L x D)

  #45 opened 2 years ago by ekansh09
  0

• How can I get ’vits_tcga_pancancer_dino_pt_patch_features‘?

  #42 opened 2 years ago by qidog
  1

• Pretrained ViTWSI-4096 model

  #37 opened 2 years ago by KiyoshiMu
  2

• tar_patch_4096 with webdataset API

  #38 opened 2 years ago by JuanDuranMcgill
  2

• Recommended GPUs

  #39 opened 2 years ago by usuyama
  2

• Worse Performance in CAMELYON16 only

  #40 opened 2 years ago by bryanwong17
  0

• Stochastic behavior when extracting the features for one image

  #32 opened 2 years ago by maduc7
  4

• average number of [4096,4096] regions per slide

  #24 opened 2 years ago by clemsgrs
  9

• cannot load pretrained model weights

  #36 opened 2 years ago by RedekopEP
  2

• Some Questions

  #27 opened 2 years ago by bryanwong17
  1

• Some questions

  #30 opened 2 years ago by jasonyin20
  1

• Number of epochs required for finetuning

  #33 opened 2 years ago by bryanwong17
  1

• 'Weakly-Supervised Training' task - Issue with fast_cluster_ids.pkl file

  #34 opened 2 years ago by gaiacervi
  2

• Process of training subtyping task on custom WSIs dataset using provided pretrained model

  #35 opened 2 years ago by SongDoHou
  2

• subtyping: training loss not really decreasing

  #25 opened 2 years ago by clemsgrs
  8