Pinned Repositories
CLAM
Open source tools for computational pathology - Nature BME
CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
HEST
Integrating histology and spatial transcriptomics - NeurIPS 2024
HIPT
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
MCAT
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
TITAN
Multimodal Whole Slide Foundation Model for Pathology
TRIDENT
Toolkit for large-scale whole-slide image processing.
UNI
Pathology Foundation Model - Nature Medicine
Mahmood Lab @ Harvard/MGB's Repositories
mahmoodlab/CLAM
Open source tools for computational pathology - Nature BME
mahmoodlab/HIPT
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
mahmoodlab/UNI
Pathology Foundation Model - Nature Medicine
mahmoodlab/CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
mahmoodlab/TRIDENT
Toolkit for large-scale whole-slide image processing.
mahmoodlab/PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
mahmoodlab/HEST
Integrating histology and spatial transcriptomics - NeurIPS 2024
mahmoodlab/TITAN
Multimodal Whole Slide Foundation Model for Pathology
mahmoodlab/PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
mahmoodlab/MCAT
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
mahmoodlab/NucleiSegmentation
cGAN-based Multi Organ Nuclei Segmentation
mahmoodlab/Patch-GCN
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
mahmoodlab/SurvPath
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
mahmoodlab/PANTHER
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
mahmoodlab/TANGLE
Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
mahmoodlab/SISH
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
mahmoodlab/MI-Zero
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
mahmoodlab/TriPath
Analysis of 3D pathology samples using weakly supervised AI - Cell
mahmoodlab/Patho-Bench
Standardized benchmark for computational pathology foundation models.
mahmoodlab/MMP
Multimodal prototyping for cancer survival prediction - ICML 2024
mahmoodlab/MADELEINE
MADELEINE: multi-stain slide representation learning (ECCV'24)
mahmoodlab/MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
mahmoodlab/CRANE
Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
mahmoodlab/multimodal-cancer-origin-prediction
Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction
mahmoodlab/varpool
Variance pooling to incorporate ITH in CPath models - MICCAI 2022
mahmoodlab/CPATH_demographics
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
mahmoodlab/MANTA
Multimodal AI for Renal Allograft Biopsy Assessment
mahmoodlab/hest-website
Jekyll website for HEST-1k
mahmoodlab/MAXIM
MArker imputation model for multiple\underlineX IMages
mahmoodlab/tox-foundation-ui