mahmoodlab/CLAM

Issues

• The code really needs fixing

  #232 opened 3 months ago by onbigion13
  0

• What data types can be processed

  #222 opened 5 months ago by syy-create
  3

• About parameters in process_list.autogen.csv

  #231 opened 3 months ago by syy-create
  0

• For binary sub-disease classification

  #230 opened 3 months ago by pxliang
  0

• Conda installation error with PyTorch

  #190 opened a year ago by jonasmrr
  4

• Only one GPU during training

  #224 opened 5 months ago by YinZhe0412
  2

• Problems encountered during feature extraction

  #229 opened 3 months ago by DuWei0126
  0

• When running create_heatmaps it appears to take up a lot of existing memory! Is this normal?

  #226 opened 4 months ago by hemo0826
  1

• Issue running create_heatmaps.py

  #215 opened 6 months ago by suminwei
  2

• Extracting features problem with h5 files

  #227 opened 4 months ago by BioCoderR
  1

• Error in plotting heatmap

  #192 opened a year ago by dawalisi
  3

• Run your own dataset

  #213 opened 6 months ago by Tanhongyun
  2

• Many Nan values in the extracted feature

  #225 opened 5 months ago by folkaholic
  0

• Some artifacts are identified as tissue regions

  #223 opened 5 months ago by huha149
  0

• Running eval.py

  #217 opened 6 months ago by suminwei
  3

• Seeking Advice: Low Accuracy in CLAM Training on CAMELYON16 Dataset

  #220 opened 5 months ago by ACNicotine
  0

• `custom_downsample` specification flipped for heatmaps?

  #219 opened 6 months ago by vipulnj
  3

• difference among seg_level, patch_level and custom_downsample about TCGA-BRCA

  #207 opened 8 months ago by ljhOfGithub
  7

• Threshold adjustment in preprocessing stage

  #218 opened 5 months ago by ACNicotine
  1

• Failed to install using clam.yaml due to conflicts

  #216 opened 6 months ago by l-cli
  2

• CLAM main.py failes

  #202 opened 9 months ago by eladzis
  3

• Issue running main.py

  #212 opened 7 months ago by suminwei
  2

• Some WSI cannot be segmented

  #214 opened 6 months ago by Ysc-shark
  1

• ".ndpi" type WSI

  #210 opened 7 months ago by LiuJin629
  7

• The problem of uniform magnification

  #211 opened 7 months ago by LiuJin629
  2

• How to set the parameters when converting from 40X WSI to 20X WSI

  #208 opened 8 months ago by YinZhe0412
  2

• Poor performance

  #209 opened 8 months ago by AnitaGoro
  0

• HeatMap

  #200 opened 8 months ago by wxyz-wjx
  1

• problem about N fold cross validation using create_split_seq.py

  #197 opened 8 months ago by ljhOfGithub
  1

• How to set the "step_size" Parameter in create_patches.py or create_patches_fp.py?

  #201 opened 9 months ago by ShiCrazy
  1

• I want to use your tumor segmentation pretrained model

  #203 opened 8 months ago by AnitaGoro
  1

• Running CLAM without Feature Extraction

  #204 opened 8 months ago by VictorLee94
  0

• minor fix for create_patches_fp.py saving .h5 files to image source directory

  #206 opened 8 months ago by VictorLee94
  2

• about TCGA-A7-A0CD-01Z-00-DX2.609CED8D-5947-4753-A75B-73A8343B47EC.svs

  #198 opened 8 months ago by ljhOfGithub
  1

• positional information restore

  #205 opened 8 months ago by ljhOfGithub
  0

• Image Augmentation

  #185 opened a year ago by nabilapuspit
  4

• A little question in /models/model_clam.py

  #180 opened 10 months ago by ShiCrazy
  0

• I am experiencing 0% GPU utilization when using the NVIDIA RTX 3090 GPU for feature extraction.

  #196 opened a year ago by Liuyifan1016
  2

• label of instances

  #195 opened a year ago by ravigupta131
  0

• Use feature extraction files to train a ML model

  #179 opened a year ago by Tato14
  1

• Different slide numbers for TCGA-KICH/KIRC/KIRP in TCGA website and TCGA-RCC you mentioned in the paper

  #191 opened a year ago by Shentl
  2

• Question about extracting features on Camelyon16

  #181 opened a year ago by Raymvp
  1

• [F601] dictionary key 'num_workers' repeated with different values

  #186 opened a year ago by research-police
  1

• Function name overwrites built-in function

  #188 opened a year ago by research-police
  1

• Please do not use star imports

  #187 opened a year ago by research-police
  1

• Validation loss does not decrease

  #189 opened a year ago by scogna02
  2

• Loss is oscillating and not minimizing

  #184 opened a year ago by nam1410
  8

• Problem with process_contour function when contour is None

  #183 opened a year ago by loic-lb
  0

• Problems about extracting freatures

  #182 opened a year ago by Uninhibit
  0

• I wrote about the masking part before, but it's not solved.

  #178 opened a year ago by JaeHyeok-2
  2