mahmoodlab/CLAM

Issues

• evaluation script vs evaluation during training

  #286 opened 7 days ago by mhoibo
  0

• Request for Code to Generate Fine-Grained Heatmaps in CLAM Project

  #285 opened 7 days ago by rongguangda
  0

• shape incompatibility in score2percentile function in create_heatmaps

  #282 opened 13 days ago by cagankpln
  1

• WSI too big

  #284 opened 10 days ago by Nail-it-Jason
  0

• Error occurred when patching

  #280 opened 23 days ago by lsk-china
  1

• Add version information for dependencies?

  #279 opened a month ago by dodoflyy
  2

• Specify masks?

  #281 opened 17 days ago by mguzm4n
  0

• Using eval.py

  #283 opened 13 days ago by suminwei
  0

• Patch levels

  #278 opened a month ago by suminwei
  2

• visualization

  #276 opened a month ago by studymanhujinbo
  3

• Is the code for the demo for http://clam.mahmoodlab.org/ available

  #277 opened a month ago by his0car
  0

• Eval script usage

  #274 opened 2 months ago by rohith2011
  0

• some questions about parameter setting of clustering in main.py

  #270 opened 2 months ago by GeneGee
  0

• Can't install CLAM through env.yml file

  #272 opened 2 months ago by mguzm4n
  1

• Problem running split in CONCH/CLAM environment

  #248 opened 3 months ago by suminwei
  2

• ViT？

  #271 opened 2 months ago by sjjadsa
  0

• Adapting data loader to multi class & multi label

  #247 opened 2 months ago by Fel1xJulian
  1

• Attention maps for multiple predictions

  #256 opened 2 months ago by otto863
  1

• About the custom_downsample parameter in extract_feature_fp.py

  #259 opened 2 months ago by H-Q-N
  1

• Questions about threshold parameters

  #243 opened 2 months ago by huha149
  1

• Identify tumor regions

  #264 opened 2 months ago by wangzhengxiao
  1

• KeyError: "Unable to synchronously open attribute (can't locate attribute: 'patch_level')"

  #246 opened 3 months ago by MarioPaps
  1

• Color Issue in Heatmap File C3L-01663-21_0.75_roi_0_blur_0_rs_1_bc_0_a_0.4_l_1_bi_0_0.2.jpg in heatmap_production_results\HEATMAP_OUTPUT\LSCC Folder

  #251 opened 3 months ago by apple5413
  1

• Heatmaps are patchy and not smooth

  #254 opened 3 months ago by rohith2011
  1

• expand sdpc format

  #249 opened 3 months ago by lingxitong
  4

• heatmap

  #252 opened 3 months ago by suminwei
  1

• Datasets in configuration file and GPU Training Step

  #245 opened 3 months ago by rohith2011
  1

• Poor removal of small holes in pathological tissue, how should the parameters be adjusted

  #253 opened 3 months ago by hljWmh
  1

• The first step to get the segment ， the margin is too large

  #257 opened 3 months ago by simzhangbest
  1

• vsi format

  #250 opened 3 months ago by homadnmr
  1

• GPU usage with the new version

  #237 opened 3 months ago by gusSCIMOV
  3

• model types 'clam_sb', 'clam_mb', 'mil'

  #263 opened 3 months ago by mhoibo
  1

• 1 to 1 correspondence between slide (*.svs) and patches/stitches???

  #261 opened 3 months ago by qserenali
  1

• Error while executing main.py

  #268 opened 3 months ago by JTatsuya
  2

• Heatmaps visualization

  #265 opened 3 months ago by BioCoderR
  1

• The time that CONCH takes

  #266 opened 3 months ago by TXPsim
  2

• The split created using Create Split Seq may confuse the Training, Validation, and Test sets, leading to data leakage.

  #269 opened 3 months ago by eternalld
  0

• Segmentation parameters for WSI with partially black background

  #242 opened 6 months ago by Fel1xJulian
  1

• openslide.lowlevel.OpenSlideUnsupportedFormatError: Unsupported or missing image file

  #260 opened 4 months ago by MUYI-XIAN
  0

• Extracting Raw Patches (.jpg / ./png)

  #255 opened 4 months ago by bryanwong17
  0

• Does the heatmap visualization code always visualize the heatmap of the first class?

  #239 opened 7 months ago by minhmanho
  4

• Image likely too large for successful segmentation, aborting - implemented fix available?

  #241 opened 7 months ago by Fel1xJulian
  4

• REQUEST FOR ACCESS OF PRESET FILE FOR CAMELYON 16 DATASET?

  #240 opened 7 months ago by routsourav1729
  0

• Error during segmentation

  #234 opened 7 months ago by suminwei
  0

• Running CLAM model on independent test data

  #233 opened 7 months ago by suminwei
  0

• New code breaks CLAM_MB model

  #238 opened 8 months ago by zhanghaoyue
  1

• Unable to import 'datasets.dataset_generic'

  #236 opened 8 months ago by gusSCIMOV
  2

• For binary sub-disease classification

  #230 opened 8 months ago by pxliang
  1

• About parameters in process_list.autogen.csv

  #231 opened 8 months ago by syy-create
  1

• The code really needs fixing

  #232 opened 9 months ago by onbigion13
  2