tcga-data
There are 54 repositories under tcga-data topic.
mahmoodlab/CLAM
Open source tools for computational pathology - Nature BME
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
MarvinLer/tcga_segmentation
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
PoisonAlien/TCGAmutations
R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
sigven/oncoEnrichR
Explore the cancer relevance of your gene list
BioinformaticsFMRP/TCGAbiolinksGUI
TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
rezacsedu/Multimodal-autoencoder-for-breast-cancer
Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data
KChen-lab/Texomer
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
waldronlab/MultiAssayWorkshop
Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
HuaZou/bioinformatics_pipeline
Bioinformatics Pipeline
mahmoodlab/CPATH_demographics
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
MahShaaban/miRCancerdb
A database for microRNA-gene/protein expression correlation in cancer.
asmagen/SPAGEfinder
Computational approach to identify Survival associated Pairwise Gene Expression states.
mschubert/TCGAbiolinks-downloader
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
Eurus-Holmes/Tumor2Graph
Tumor2Graph: a novel Overall-Tumor-Profile-derived virtual graph deep learning for predicting tumor typing and subtyping.
deargen/DearWXpub
a neural network-based feature selection algorithm for next-generation sequencing data
mar-kan/thesis
BSc thesis: "Convolutional Neural Networks and their Application in Cancer Diagnosis based on RNA-Sequencing"
peterlipan/FoF
The official implementations of our BIBM'24 paper: Focus on Focus: Focus-oriented Representation Learning and Multi-view Cross-modal Alignment for Glioma Grading
bcgsc/tasrkleat-TCGA-analysis-scripts
This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa
jingxinfu/TCGAdnloader
TCGA hg19 and hg38 data downloader.
ShixiangWang/ImmuneDR
A Community Curated Immune Resource Database in R format
urmi-21/TCGA-Data-Analysis
Examples on processing and working with TCGA mutation and RNA-Seq data
averissimo/tcga.data
Genomic data from TCGA ready to be used (organized per tissue type and in matrix form)
ropensci/cRegulome
An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
Akenaide/wsoffcli
POC ws-tcg scrapper
aws-samples/aws-glue-athena-tcga
This repository has the code for the AWS blog post - Enabling the aggregation and query of The Cancer Genome Atlas using AWS Glue and Amazon Athena
shuzhenkuang/XGEP
XGEP for expression-based prediction of human essential genes and candidate lncRNAs in cancer cells
uazadi/TIDaC
TCGA and TCIA Images Dataset Creator
WPZgithub/ConMod
Identifying conserved functional modules in multiple biological networks
adrian-aleks/TCGA-clasterization
Clasterization of TCGA dataset. Data preprocessing, visualization and clasterization with different alghoritms. Done mostly with Python 3.7 and Scikit-Learn library.
evan199893/TCGA_expression_clinical_combinator
Use this program can let user quickly combine the miRNA/Gene expression and clinical data. Speed up the data preprocessing step.
kimdesok/DeepPATH
AI HUB Project: Classification of Lung Cancer Slide Images using Deep-Learning
RRafiee/Bioconductor-GenomicDataCommons
Genomic Data Commons Query
YoannPa/biotab.manager
Scripts to manage biotab files from TCGA.
melikeguler99/TCGA_methylation_betavaluesAPP
With this ShinyApp (BetApp), you will be able to easily visualize your data including beta values from methylation arrays downloaded using the TCGA database.
ArjunBasandrai/tcga-paad-survival-analysis
Survival Analysis on the TCGA-PAAD (The Cancer Genome Atlas-Pancreatic Adenocarcinoma) dataset