PoisonAlien/TCGAmutations
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
RMIT
Issues
- 9
Significant number of discrepancies for LUAD clinical data - vital_status / days_to_death / or days_to_last_followup
#17 opened by mitchellcheung8 - 1
Request for additional metadata: Capture Kit
#16 opened by selkamand - 0
- 0
cannot read maf
#14 opened by xiaodingliu - 0
LUSC Firehose dataset includes two samples with only 1 mutation each (both silent)
#13 opened by selkamand - 1
CCLE maf files
#12 opened by shwetha141 - 1
- 3
- 5
Many duplicated variants
#8 opened by ShixiangWang - 4
Error: object 'tcga_laml_mc3' not found
#9 opened by jdjdj0202 - 2
Downloading mc3.v0.2.8.PUBLIC.maf
#5 opened by crasper9 - 4
TGCA visualisation in lolliplots
#6 opened by IrisSWE - 7
Clinical data from TCGAmutations to Maftools
#4 opened by caloto - 9
function getClinicalData() not available
#2 opened by argoat - 1