Issues
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- 0
Support for gzip'd GTF input
#440 opened by nick-youngblut - 0
Stringtie2 segmentation fault
#439 opened by YIGUIz - 0
Stringtie2 segmentation fault
#438 opened by YIGUIz - 0
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- 0
- 3
Change between 2.2.1 and 2.2.2 on gene abundance estimation with '-e' parameter
#434 opened by lldelisle - 0
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- 0
- 2
Stuck on prepDE.py
#427 opened by Kappy2 - 0
Merged genes on a de-novo assembly
#429 opened by SalvadorGJ - 0
- 2
- 0
Discrepancy in counts extraction using prepDE.py3 with multiple samples in sample_list
#428 opened by ruqinga - 4
- 2
Regions not covered by long read in --mix mode
#425 opened by ytomofuji - 0
The question for the inadequacy of transcripts
#424 opened by CuteGold0407 - 1
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How does stringtie process chimeric reads
#423 opened by HelloYanming - 0
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Non-canonical splice sites in long-read data
#422 opened by wenzelm - 2
"Segmentation fault" Error using StringTie
#394 opened by sen1019san - 0
stringtie not responding to gff file
#421 opened by Akashanil-akh - 7
An error message in stringtie's mix option
#420 opened by YIGUIz - 3
- 3
Stringtie --mix returns "Error: the input alignment file is not sorted!" while short and long-reads alone are ok
#419 opened by eggrandio - 0
gtf was not generated with -e option
#418 opened by Truman11Zeng - 1
Assembled transcripts lack canonical transcript, clearly visible in the alignment
#417 opened by mvheetve - 1
StringTie --merge
#402 opened by cc-prolix - 1
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How do I deal with this warning message?
#414 opened by Kwon419 - 0
gene count value is zero; but TPM is not zero
#413 opened by Niohuruzh - 0
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Discrepancy in Quantification Results with and without -e Option
#411 opened by HadoBoirudoWandarando - 0
stringtie mix option
#410 opened by anuradhareddi - 0
input file format
#408 opened by dvirdi01 - 1
how do you get all the potential processed transcripts
#407 opened by pcantalupo - 0
Stringtie --merge -c
#405 opened by SEVEN-XYCHEN - 1
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Whether stringtie will include novel transcripts into ballgown file? What other tools can be used to visualize novel transcripts?
#401 opened by guodudou2 - 0
I wonder 'else' clause should be commented out (or deleted) in prepDE.py3, in the block of badGenes check
#400 opened by mickeykawai - 1
Not compiling SuperReads_RNA
#399 opened by rafaeltiveron - 1
StringTie for single-end reads
#398 opened by Mirror1211 - 1
Error when running prepDE.py
#396 opened by chickenHyop - 0
- 0
- 0
"Segmentation fault" error
#393 opened by sen1019san - 3